Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30038
(529 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch... 140 2e-34
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 48 7e-07
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase... 27 1.7
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 26 3.0
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 26 4.0
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha... 25 5.3
SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe... 25 7.0
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 9.2
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ... 25 9.2
>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 341
Score = 140 bits (338), Expect = 2e-34
Identities = 71/133 (53%), Positives = 91/133 (68%), Gaps = 1/133 (0%)
Frame = +3
Query: 99 KNFSTTSQRNFKXXXXXXXXXIGQPLALLLKQNPLVTRLALYDIAPVTPGVAADLSHVNT 278
++FSTTS R FK IGQPL++LLK N V+ LAL+DI PGVAAD+ H+NT
Sbjct: 19 RSFSTTSSRAFKVAVLGAGGGIGQPLSMLLKLNDKVSELALFDIRGA-PGVAADIGHINT 77
Query: 279 PAKVSGHKGPEE-LSXAIKDADVVVIPXGVPREPGMTRDDLFNTNASIVRDIALSIAXNA 455
+ V G+ ++ L A+ ADVV+IP GVPR+PGMTRDDLF TNASIVRD+A +
Sbjct: 78 TSNVVGYAPDDKGLEKALNGADVVIIPAGVPRKPGMTRDDLFATNASIVRDLAFAAGETC 137
Query: 456 PKAIVAIITNPVN 494
P+A ++TNPVN
Sbjct: 138 PEAKYLVVTNPVN 150
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 48.4 bits (110), Expect = 7e-07
Identities = 45/141 (31%), Positives = 63/141 (44%), Gaps = 7/141 (4%)
Frame = +3
Query: 93 GAKNFSTTSQRN--FKXXXXXXXXX--IGQPLALLLKQNPLVTRLALYDI-APVTPGVAA 257
G+K FS S R+ FK +G A L + L + + D+ G A
Sbjct: 4 GSKVFSNDSVRSSSFKSIKIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLNKKKAEGEAM 63
Query: 258 DLSHVNTPAKVSGHKGPEELSXA--IKDADVVVIPXGVPREPGMTRDDLFNTNASIVRDI 431
DL+H A +S H+ L KDA VVI G ++PG TR DL N SI ++I
Sbjct: 64 DLNHA---APLS-HETRVYLGDYKDCKDATAVVITAGKNQKPGETRMDLLKANISIFKEI 119
Query: 432 ALSIAXNAPKAIVAIITNPVN 494
+ AI+ + TNPV+
Sbjct: 120 LREVTKYTKDAILLVATNPVD 140
>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
desaturase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 362
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 77 PCCTKWCKELFHHITEEL*SGGRWCR 154
P C WC ++ IT+ + G WCR
Sbjct: 319 PDCKSWCGIIYQFITDS--NVGMWCR 342
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 26.2 bits (55), Expect = 3.0
Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Frame = +2
Query: 134 SGGRWCRRWYRPAFGPSTEAESSG-DQAGFIRHSACDPRRRSRPFPREHPSQGQRP 298
S G W RR P P+ +G R A DP R R PRE +G P
Sbjct: 179 STGDWVRRGPLPPAEPAESPFGKRRTNSGRFRDPARDPSDRVREEPREWVRRGPLP 234
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.8 bits (54), Expect = 4.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 65 KTCRPCCTKWCKELFHHITEEL*SGGRWCRRWY 163
K C+ C + C+ +HHI E+L CRR Y
Sbjct: 33 KPCQ-CGYRVCRFCWHHIKEDLNGRCPACRRLY 64
>SPBC36.06c |spo9||farnesyl pyrophosphate
synthetase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 351
Score = 25.4 bits (53), Expect = 5.3
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 474 IITNPVNFYSALLPLKCS 527
IIT +FYS LP+KC+
Sbjct: 192 IITYKTSFYSFYLPIKCA 209
>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 455
Score = 25.0 bits (52), Expect = 7.0
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +3
Query: 219 LYDIAPVTPGVAADLSHVNTPAKVSGHKGPEELSXA 326
L + APV G A S + V+G GP ELS A
Sbjct: 12 LINSAPVILGYALQNSLQTSSVIVTGRLGPSELSVA 47
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 24.6 bits (51), Expect = 9.2
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +2
Query: 146 WCRRWYRPAFGPSTEAESSGDQAGFIRHSACD 241
WC + +P F + S GD G R C+
Sbjct: 260 WCGKQEKPEFVKNLVPHSCGDPCGKTRGQDCE 291
>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 937
Score = 24.6 bits (51), Expect = 9.2
Identities = 15/70 (21%), Positives = 31/70 (44%)
Frame = +3
Query: 297 HKGPEELSXAIKDADVVVIPXGVPREPGMTRDDLFNTNASIVRDIALSIAXNAPKAIVAI 476
H E ++ ++ AD+VV G+P + D + D+ ++ +A K
Sbjct: 192 HSKTESIADIVRTADIVVAAIGIPH---FVKADWLKKGV-VAIDVGINSIPDATKKSGYR 247
Query: 477 ITNPVNFYSA 506
+T ++F +A
Sbjct: 248 LTGDIDFENA 257
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,099,747
Number of Sequences: 5004
Number of extensions: 41088
Number of successful extensions: 94
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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