Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30038
         (529 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate dehydr...   164   4e-41
U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical pr...    30   0.89 
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr...    30   0.89 
Z70038-3|CAA93883.2|  541|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z81129-1|CAB03408.1|  350|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z50863-2|CAA90737.1|  351|Caenorhabditis elegans Hypothetical pr...    27   8.3  
AL117204-1|CAB55141.1|  328|Caenorhabditis elegans Hypothetical ...    27   8.3  

>AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate
           dehydrogenase protein 1 protein.
          Length = 341

 Score =  164 bits (398), Expect = 4e-41
 Identities = 78/111 (70%), Positives = 94/111 (84%)
 Frame = +3

Query: 162 IGQPLALLLKQNPLVTRLALYDIAPVTPGVAADLSHVNTPAKVSGHKGPEELSXAIKDAD 341
           IGQPL LLLKQ+PLV  LALYD+   TPGVAADLSH+++ AKV+ H GP+EL  A+++AD
Sbjct: 40  IGQPLGLLLKQDPLVAHLALYDVVN-TPGVAADLSHIDSNAKVTAHTGPKELYAAVENAD 98

Query: 342 VVVIPXGVPREPGMTRDDLFNTNASIVRDIALSIAXNAPKAIVAIITNPVN 494
           V+VIP GVPR+PGMTRDDLFNTNA IVRD+A  IA  +PKA++AIITNPVN
Sbjct: 99  VIVIPAGVPRKPGMTRDDLFNTNAGIVRDLAAVIAKASPKALIAIITNPVN 149


>U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical protein
            C23F12.1a protein.
          Length = 2329

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
 Frame = +3

Query: 192  QNPLVT-RLALYDIAPVTPGVAADLSHVNTPAKVS---GHKGPEELSXAIKDADVVVIPX 359
            Q+PL    + +YD + +  G   + S++N   + +   G  G   L  AIKDAD V+IP 
Sbjct: 980  QHPLSPFAVRVYDASEIIVGEIPNQSNLNDTVEFTVDAGRAGFGNLEMAIKDADGVIIPS 1039

Query: 360  GV 365
             V
Sbjct: 1040 HV 1041


>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical protein
            C23F12.1b protein.
          Length = 2747

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
 Frame = +3

Query: 192  QNPLVT-RLALYDIAPVTPGVAADLSHVNTPAKVS---GHKGPEELSXAIKDADVVVIPX 359
            Q+PL    + +YD + +  G   + S++N   + +   G  G   L  AIKDAD V+IP 
Sbjct: 980  QHPLSPFAVRVYDASEIIVGEIPNQSNLNDTVEFTVDAGRAGFGNLEMAIKDADGVIIPS 1039

Query: 360  GV 365
             V
Sbjct: 1040 HV 1041


>Z70038-3|CAA93883.2|  541|Caenorhabditis elegans Hypothetical
           protein ZK1067.4 protein.
          Length = 541

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 129 SSSVMWWKSSLHHFVQQGRQV 67
           S  ++WWKS  +H+ ++ RQV
Sbjct: 120 SPPIVWWKSVCYHYTRKTRQV 140


>Z81129-1|CAB03408.1|  350|Caenorhabditis elegans Hypothetical
           protein T23F1.3 protein.
          Length = 350

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 145 LVPPVVSASLWPFY*SRILW*PGWLYT 225
           + P ++   +WP+    + W  GWLY+
Sbjct: 265 IAPTLLVPLIWPYLKIEVSWQTGWLYS 291


>Z50863-2|CAA90737.1|  351|Caenorhabditis elegans Hypothetical
           protein C14H10.4 protein.
          Length = 351

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 145 LVPPVVSASLWPFY*SRILW*PGWLYT 225
           L+ PVV AS + F+ S+  W  GWLY+
Sbjct: 265 LLCPVV-ASFFHFFFSKFSWQTGWLYS 290


>AL117204-1|CAB55141.1|  328|Caenorhabditis elegans Hypothetical
           protein Y116A8C.1 protein.
          Length = 328

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 124 LCDVVEKFFAPFCTARAAG 68
           +C  +  FF PFC  RAAG
Sbjct: 164 VCISIRTFFGPFCQNRAAG 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,003,278
Number of Sequences: 27780
Number of extensions: 254388
Number of successful extensions: 599
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)