Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30037
         (585 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15625| Best HMM Match : E1_dh (HMM E-Value=0)                      148   4e-36
SB_17224| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)                  28   4.9  
SB_34024| Best HMM Match : VLPT (HMM E-Value=3.7)                      27   8.5  
SB_37839| Best HMM Match : HA2 (HMM E-Value=4e-21)                     27   8.5  

>SB_15625| Best HMM Match : E1_dh (HMM E-Value=0)
          Length = 352

 Score =  148 bits (358), Expect = 4e-36
 Identities = 66/105 (62%), Positives = 78/105 (74%)
 Frame = +3

Query: 270 YKLHKLDQGPATSATLTSEDALKLYEQLTILRRIETASGNLYKEKIIRGFCHLYSGQEAV 449
           Y LHK+  GP   A +T E+ L  Y Q+ I+RR+ETA+ NLYK K+IRGFCHLYSGQEA 
Sbjct: 2   YTLHKITDGPPGKAVMTREEGLTYYRQMQIVRRMETAASNLYKSKVIRGFCHLYSGQEAC 61

Query: 450 AVGMRAAMRDADSVITAYRCHGWTYLMGVSVLGVLSELTGRRTGC 584
            VGM A++   DSVITAYRCHGWTY+ G S   VL ELTGR+TGC
Sbjct: 62  CVGMEASIDKNDSVITAYRCHGWTYMRGRSAREVLCELTGRKTGC 106


>SB_17224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 935

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = +3

Query: 402 KIIRGFCHLYSGQEAVAVGMRAAMRDADSVITAYRCHGWTYLM 530
           +++  + H Y+  E VA G+R  + + D+ +  +R + + Y+M
Sbjct: 503 RLLSAYTHAYTYAEGVADGIR--LLETDTCVATHRVYAYVYVM 543


>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
          Length = 3342

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/68 (29%), Positives = 31/68 (45%)
 Frame = +3

Query: 162  AAKFLAGNTITKVTAPVVATNAKYSTKKEATFEIKPYKLHKLDQGPATSATLTSEDALKL 341
            A+  LA  T+++V   VV  N   +   E TF+        LD   AT A     + LK 
Sbjct: 2125 ASPTLAETTVSEVD--VVLHNKAQALSTEETFDFSSGDNTNLDASGATEAQFQKTNPLKR 2182

Query: 342  YEQLTILR 365
             + +T+L+
Sbjct: 2183 LDPVTVLQ 2190


>SB_34024| Best HMM Match : VLPT (HMM E-Value=3.7)
          Length = 368

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -2

Query: 575 PAPRQLREHPQHTNAHEISPSVTTIRGDHRVCIAHRCSHTY-CHGFLS*VQVTETTDDL 402
           P   +  EHP+     E+  ++ T  G+  + +   C H Y     L  VQ++ +T DL
Sbjct: 69  PKALRTNEHPRALRTAELPKALRTPTGNRPLLLLVTCFHGYITSARLRNVQLSSSTSDL 127


>SB_37839| Best HMM Match : HA2 (HMM E-Value=4e-21)
          Length = 422

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 545 QHTNAHEISPSVTTIRGDHRVCIAHRCSHTYCHGFLS*VQVTE 417
           +H+    I PSV       R+ +  +CS TY H F S  ++ E
Sbjct: 62  RHSFPKLIIPSVRFENSCSRIRVREQCSRTYVHMFESGTEIEE 104


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,515,521
Number of Sequences: 59808
Number of extensions: 339432
Number of successful extensions: 930
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)