Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30037
(585 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47812-8|CAD59156.1| 414|Caenorhabditis elegans Hypothetical pr... 173 8e-44
Z47812-7|CAA87793.1| 397|Caenorhabditis elegans Hypothetical pr... 171 3e-43
AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical ... 31 0.60
AC006712-6|AAO21405.1| 765|Caenorhabditis elegans Temporarily a... 30 1.4
AC006712-5|AAK39326.2| 851|Caenorhabditis elegans Temporarily a... 30 1.4
U23522-2|AAC46818.1| 521|Caenorhabditis elegans Hypothetical pr... 29 1.8
AF077542-2|AAC26294.1| 244|Caenorhabditis elegans Hypothetical ... 29 1.8
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z71266-7|CAA95845.1| 987|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z69902-11|CAA93766.2| 935|Caenorhabditis elegans Hypothetical p... 28 5.6
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 28 5.6
AL033535-1|CAB70217.1| 935|Caenorhabditis elegans Hypothetical ... 28 5.6
>Z47812-8|CAD59156.1| 414|Caenorhabditis elegans Hypothetical
protein T05H10.6b protein.
Length = 414
Score = 173 bits (421), Expect = 8e-44
Identities = 82/141 (58%), Positives = 99/141 (70%)
Frame = +3
Query: 159 SAAKFLAGNTITKVTAPVVATNAKYSTKKEATFEIKPYKLHKLDQGPATSATLTSEDALK 338
S A L + +TA + T E +F KP KLHKLD GP TS TL EDALK
Sbjct: 15 STAMSLFARQLQSLTASGIRTQQVRLASTEVSFHTKPCKLHKLDNGPNTSVTLNREDALK 74
Query: 339 LYEQLTILRRIETASGNLYKEKIIRGFCHLYSGQEAVAVGMRAAMRDADSVITAYRCHGW 518
Y + ++RR+E+A+GNLYKEK IRGFCHLYSGQEA AVGM+AAM + D+VITAYRCHGW
Sbjct: 75 YYRDMQVIRRMESAAGNLYKEKKIRGFCHLYSGQEACAVGMKAAMTEGDAVITAYRCHGW 134
Query: 519 TYLMGVSVLGVLSELTGRRTG 581
T+L+G +V VL+ELTGR G
Sbjct: 135 TWLLGATVTEVLAELTGRVAG 155
>Z47812-7|CAA87793.1| 397|Caenorhabditis elegans Hypothetical
protein T05H10.6a protein.
Length = 397
Score = 171 bits (416), Expect = 3e-43
Identities = 80/136 (58%), Positives = 97/136 (71%)
Frame = +3
Query: 174 LAGNTITKVTAPVVATNAKYSTKKEATFEIKPYKLHKLDQGPATSATLTSEDALKLYEQL 353
L + +TA + T E +F KP KLHKLD GP TS TL EDALK Y +
Sbjct: 3 LFARQLQSLTASGIRTQQVRLASTEVSFHTKPCKLHKLDNGPNTSVTLNREDALKYYRDM 62
Query: 354 TILRRIETASGNLYKEKIIRGFCHLYSGQEAVAVGMRAAMRDADSVITAYRCHGWTYLMG 533
++RR+E+A+GNLYKEK IRGFCHLYSGQEA AVGM+AAM + D+VITAYRCHGWT+L+G
Sbjct: 63 QVIRRMESAAGNLYKEKKIRGFCHLYSGQEACAVGMKAAMTEGDAVITAYRCHGWTWLLG 122
Query: 534 VSVLGVLSELTGRRTG 581
+V VL+ELTGR G
Sbjct: 123 ATVTEVLAELTGRVAG 138
>AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical
protein Y23H5B.6 protein.
Length = 732
Score = 31.1 bits (67), Expect = 0.60
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +3
Query: 135 DKMSKLIPSAAKFLAGNTITKVTAPVVATNAKYSTKKEATFEIKPYKLHKLDQGPAT 305
+K+S + S K L +TKV+A N K + TF + +L +L++GP+T
Sbjct: 579 EKISNITISKTKPLK-KAVTKVSAAKKILNKKLKVNTKKTFGAEDDELEELEEGPST 634
>AC006712-6|AAO21405.1| 765|Caenorhabditis elegans Temporarily
assigned gene nameprotein 332, isoform b protein.
Length = 765
Score = 29.9 bits (64), Expect = 1.4
Identities = 39/144 (27%), Positives = 59/144 (40%), Gaps = 15/144 (10%)
Frame = +3
Query: 138 KMSKLIPSAAKFLAGNTITKVTAPVVATNAKYSTKKEATFEIKPYKLHKLDQ-GPATSAT 314
+ S + P +A + K +AP ++ KKE TFE K L Q A S
Sbjct: 372 RASSVAPQSAPIAPTPKVAKSSAPKEPKESRKEHKKETTFEASGAKSEDLMQINNALSMI 431
Query: 315 LTSEDALK--------LYEQLT-ILRRIETASGNLYKEKII---RGFCHLYSGQEA-VAV 455
E+ LK + ++LT + R E + EK+I R C GQ A +
Sbjct: 432 REREEKLKAELAAAQAIKDKLTSVKNRREDNPNEPFPEKLINETRALCTTQVGQNASSSS 491
Query: 456 GMRAAMRDADSVITA-YRCHGWTY 524
AA+R+ S A R +G+ +
Sbjct: 492 ASSAALRNGRSKKAASARLYGYEF 515
>AC006712-5|AAK39326.2| 851|Caenorhabditis elegans Temporarily
assigned gene nameprotein 332, isoform a protein.
Length = 851
Score = 29.9 bits (64), Expect = 1.4
Identities = 39/144 (27%), Positives = 59/144 (40%), Gaps = 15/144 (10%)
Frame = +3
Query: 138 KMSKLIPSAAKFLAGNTITKVTAPVVATNAKYSTKKEATFEIKPYKLHKLDQ-GPATSAT 314
+ S + P +A + K +AP ++ KKE TFE K L Q A S
Sbjct: 372 RASSVAPQSAPIAPTPKVAKSSAPKEPKESRKEHKKETTFEASGAKSEDLMQINNALSMI 431
Query: 315 LTSEDALK--------LYEQLT-ILRRIETASGNLYKEKII---RGFCHLYSGQEA-VAV 455
E+ LK + ++LT + R E + EK+I R C GQ A +
Sbjct: 432 REREEKLKAELAAAQAIKDKLTSVKNRREDNPNEPFPEKLINETRALCTTQVGQNASSSS 491
Query: 456 GMRAAMRDADSVITA-YRCHGWTY 524
AA+R+ S A R +G+ +
Sbjct: 492 ASSAALRNGRSKKAASARLYGYEF 515
>U23522-2|AAC46818.1| 521|Caenorhabditis elegans Hypothetical
protein W06B4.2 protein.
Length = 521
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +3
Query: 354 TILRRIETASGNLYKEKIIRGFCHLYSGQEAVAVGMRAAMRDADS 488
T+ RRIET + K+ R LY+G E A G + + DAD+
Sbjct: 171 TLERRIETEKETIDIFKMTRESLGLYAGIEGGATGSKLVIIDADT 215
>AF077542-2|AAC26294.1| 244|Caenorhabditis elegans Hypothetical
protein Y57G7A.5 protein.
Length = 244
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +3
Query: 279 HKLDQGPATSATLTSE--DALKLYEQLTILRRIETASGNLYK-EKIIRGFCHLY 431
H LD+ L+ E D L ++ ++ R ETA GN+Y EK +R HLY
Sbjct: 50 HVLDEQTRLRTRLSEEFGDFLNRSKR-SLTRNFETADGNVYSFEKNLRELLHLY 102
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
protein F29D11.1 protein.
Length = 4753
Score = 27.9 bits (59), Expect = 5.6
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -2
Query: 260 FECRLF-FRAVFCVCRYNRCSHFRDCVSG 177
++C + + +V C+ Y RC + DC G
Sbjct: 97 WQCDTYTWHSVSCIAEYQRCDNITDCADG 125
>Z71266-7|CAA95845.1| 987|Caenorhabditis elegans Hypothetical
protein R06C7.8 protein.
Length = 987
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 188 NHESDCTGCSDKRKIQHEKRGDI 256
N+ES+ TGC +R+ + K+GDI
Sbjct: 624 NNESEITGCKIRRRSEIIKQGDI 646
>Z69902-11|CAA93766.2| 935|Caenorhabditis elegans Hypothetical
protein C47D12.8 protein.
Length = 935
Score = 27.9 bits (59), Expect = 5.6
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +3
Query: 174 LAGNTITKVTAPVVATNAKYSTKKEATFEIKPYKLHKLDQGPATSATLTSEDALKLYEQL 353
+AG T K AT AK++ E EIK + K D+G + + L + L Q+
Sbjct: 351 IAGVTNGKADYKKFATPAKWTVLSEILREIKMLPVEKKDRGNDSPSVLVITSSEDLSRQV 410
Query: 354 T 356
T
Sbjct: 411 T 411
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
receptor-related protein protein.
Length = 4753
Score = 27.9 bits (59), Expect = 5.6
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -2
Query: 260 FECRLF-FRAVFCVCRYNRCSHFRDCVSG 177
++C + + +V C+ Y RC + DC G
Sbjct: 97 WQCDTYTWHSVSCIAEYQRCDNITDCADG 125
>AL033535-1|CAB70217.1| 935|Caenorhabditis elegans Hypothetical
protein C47D12.8 protein.
Length = 935
Score = 27.9 bits (59), Expect = 5.6
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +3
Query: 174 LAGNTITKVTAPVVATNAKYSTKKEATFEIKPYKLHKLDQGPATSATLTSEDALKLYEQL 353
+AG T K AT AK++ E EIK + K D+G + + L + L Q+
Sbjct: 351 IAGVTNGKADYKKFATPAKWTVLSEILREIKMLPVEKKDRGNDSPSVLVITSSEDLSRQV 410
Query: 354 T 356
T
Sbjct: 411 T 411
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,765,515
Number of Sequences: 27780
Number of extensions: 253234
Number of successful extensions: 672
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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