Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30036
         (716 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00015B465C Cluster: PREDICTED: similar to guanine nu...    42   0.011
UniRef50_P62879 Cluster: Guanine nucleotide-binding protein G(I)...    41   0.027
UniRef50_Q4S8Y3 Cluster: Chromosome 7 SCAF14703, whole genome sh...    40   0.081
UniRef50_Q7NLE9 Cluster: WD-repeat protein; n=1; Gloeobacter vio...    34   4.0  
UniRef50_UPI00006CB1CD Cluster: hypothetical protein TTHERM_0030...    33   7.0  

>UniRef50_UPI00015B465C Cluster: PREDICTED: similar to guanine
           nucleotide-binding protein subunit beta-like; n=1;
           Nasonia vitripennis|Rep: PREDICTED: similar to guanine
           nucleotide-binding protein subunit beta-like - Nasonia
           vitripennis
          Length = 546

 Score = 42.3 bits (95), Expect = 0.011
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = +2

Query: 2   GMAVATGSWDSFLRIWN 52
           GMAVATGSWDSFLRIWN
Sbjct: 530 GMAVATGSWDSFLRIWN 546


>UniRef50_P62879 Cluster: Guanine nucleotide-binding protein
           G(I)/G(S)/G(T) subunit beta-2; n=214; Eukaryota|Rep:
           Guanine nucleotide-binding protein G(I)/G(S)/G(T)
           subunit beta-2 - Homo sapiens (Human)
          Length = 340

 Score = 41.1 bits (92), Expect = 0.027
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = +2

Query: 2   GMAVATGSWDSFLRIWN 52
           GMAVATGSWDSFL+IWN
Sbjct: 324 GMAVATGSWDSFLKIWN 340


>UniRef50_Q4S8Y3 Cluster: Chromosome 7 SCAF14703, whole genome
           shotgun sequence; n=2; Eukaryota|Rep: Chromosome 7
           SCAF14703, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 378

 Score = 39.5 bits (88), Expect = 0.081
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +2

Query: 2   GMAVATGSWDSFLRIWN 52
           GMAV TGSWDSFL+IWN
Sbjct: 362 GMAVCTGSWDSFLKIWN 378


>UniRef50_Q7NLE9 Cluster: WD-repeat protein; n=1; Gloeobacter
           violaceus|Rep: WD-repeat protein - Gloeobacter violaceus
          Length = 1183

 Score = 33.9 bits (74), Expect = 4.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 2   GMAVATGSWDSFLRIWN*TSHTNKHLNTHPNICRMIS 112
           G  +A+GSWD+ +R+WN        L  H  I R ++
Sbjct: 788 GQRLASGSWDATVRVWNADGRCQSILRGHSGIIRSVA 824


>UniRef50_UPI00006CB1CD Cluster: hypothetical protein TTHERM_00300580;
            n=1; Tetrahymena thermophila SB210|Rep: hypothetical
            protein TTHERM_00300580 - Tetrahymena thermophila SB210
          Length = 1885

 Score = 33.1 bits (72), Expect = 7.0
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = -1

Query: 359  SSRVNRLNNKLVH*MLVKSCLALSLPSLHEALARHLPCYNGTKSETFTQPSTTIQSF 189
            +SR+NR+NNK++       CL L  P L++ L+      N  +S        T+QSF
Sbjct: 1585 TSRINRINNKIIILAFFVFCLTLPYPILNKVLSNRYITQN-QQSLPMISELYTVQSF 1640


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 633,603,857
Number of Sequences: 1657284
Number of extensions: 11155892
Number of successful extensions: 26547
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26523
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)