Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30036
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    30   0.29 
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git...    28   1.5  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    27   2.0  
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    27   2.0  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    27   2.7  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    26   4.7  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    26   6.2  

>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 341 LNNKLVH*MLVKSCLALSLPSLHEALARHLPCYNGTKSETFTQP 210
           L+N + H  L++ C ++ L  + E      PCYN  +S   T P
Sbjct: 253 LDNSVAHMSLIEYCFSVLLILMSEENNNGTPCYNNYRSSKNTLP 296


>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
           Git5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 305

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 2   GMAVATGSWDSFLRIWN 52
           G  +ATGSWD  +R+W+
Sbjct: 286 GTMLATGSWDECVRLWS 302


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -2

Query: 310 SNRASLCRYHRS-TRHSRATYRATTVLSQKHSRSRPQLYKASTQSA 176
           S+R+S  R+  S +RH    Y  +   S +HSRSR +  + S++S+
Sbjct: 154 SSRSSRSRHPSSRSRHRYDDYSRSPPYSSRHSRSRRRYEERSSRSS 199


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 2   GMAVATGSWDSFLRIWN 52
           G  + +GSWD  +RIWN
Sbjct: 150 GTLLVSGSWDETVRIWN 166


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 2   GMAVATGSWDSFLRIWN 52
           G  +A+GSWD  +RIW+
Sbjct: 479 GSLLASGSWDKTVRIWD 495


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 112 SNIDPSIYVYL*KLMSVCSSCTPIELKLCIVVDGCVNVSDLVPL 243
           S+ D  + +Y  +L S   SC P ELK C+        S +VPL
Sbjct: 125 SHKDFYVRLYSVELFSAILSCRPTELKDCLQTFPSAISSIMVPL 168


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 11  VATGSWDSFLRIW 49
           + TGSWDS  R+W
Sbjct: 112 IITGSWDSTARVW 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,673,454
Number of Sequences: 5004
Number of extensions: 50285
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)