Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30036
         (716 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1783 + 29480987-29481165,29481526-29481685,29481767-294818...    31   1.2  
03_05_0621 - 26198985-26199020,26199539-26199652,26200260-262006...    29   2.8  
01_01_0012 + 71903-72935,73468-73981,74619-76008                       29   2.8  

>07_03_1783 +
           29480987-29481165,29481526-29481685,29481767-29481862,
           29481948-29482062,29482175-29482337,29482536-29482707,
           29483924-29484013,29484137-29484598,29484675-29485268,
           29485486-29485554,29485810-29485902,29486432-29486677,
           29487277-29487417,29487748-29487828,29487911-29487973,
           29488059-29488166,29488303-29488383,29488474-29488521,
           29488979-29489053,29489973-29490068,29490156-29490236,
           29490295-29490402,29490989-29491033,29491119-29491202,
           29491379-29491482,29491581-29491728
          Length = 1233

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -3

Query: 648 SIDEGPQPLTNQNR*KFIIKKRTLMTLHYVTCLEKHSLYSNI 523
           S  E P+   ++N    +   +TLM+L++  C +KHSL  ++
Sbjct: 854 STPEAPKDGGSENLSSSVADSQTLMSLYFALCTKKHSLLRHV 895


>03_05_0621 -
           26198985-26199020,26199539-26199652,26200260-26200623,
           26201232-26201527
          Length = 269

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 2   GMAVATGSWDSFLRIWN*TSH 64
           G A+ TGSWD  L+IW  + H
Sbjct: 245 GSALCTGSWDKNLKIWAFSGH 265


>01_01_0012 + 71903-72935,73468-73981,74619-76008
          Length = 978

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 307 NRASLCRYHRSTRHSRATYRATTVLSQKHSRS 212
           +R S  R HRS+RHSR  Y   T    K  +S
Sbjct: 826 SRHSSSRSHRSSRHSREKYHGDTTDQHKSKKS 857


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,216,233
Number of Sequences: 37544
Number of extensions: 305468
Number of successful extensions: 714
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)