Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30036
         (716 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6244| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.6  
SB_11388| Best HMM Match : MFS_1 (HMM E-Value=0.0022)                  28   6.6  
SB_5725| Best HMM Match : Ldl_recept_b (HMM E-Value=0.019)             28   6.6  
SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0)                       28   6.6  
SB_56622| Best HMM Match : ImpA-rel_N (HMM E-Value=1)                  28   8.7  
SB_44066| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_534| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   8.7  

>SB_6244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +1

Query: 583 PFF---YNELLSILVSQRLRPLVDRWRFNIMSLVIDVKSRI 696
           PFF   Y    S + +Q+ R L+DRWR      VI+  S +
Sbjct: 125 PFFGRTYMTFASDIANQQTRKLIDRWRLQQPGSVIEAFSAV 165


>SB_11388| Best HMM Match : MFS_1 (HMM E-Value=0.0022)
          Length = 720

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +2

Query: 278 AMVTTKRGTI*LAFNVPIYCSADLHVSSFIEI*MYLKN-EMVLISIYGDNIIAKATY 445
           +M+  + GTI + F + +  S +L  SSFI    +L +   V    YG + +A ATY
Sbjct: 437 SMILNRAGTINVLFGIILVTSVNLFCSSFISGPWHLVSFGFVEGFTYGTSWVAMATY 493


>SB_5725| Best HMM Match : Ldl_recept_b (HMM E-Value=0.019)
          Length = 409

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 500 VHRRFY*TMFEYNECFSKHVT*CKVISVLF 589
           +H RFY T   YN+ ++ H++ C V++  +
Sbjct: 289 LHSRFYDTKSLYNQGYTPHISLCLVVNCAY 318


>SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 1705

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/62 (24%), Positives = 32/62 (51%)
 Frame = -1

Query: 311 VKSCLALSLPSLHEALARHLPCYNGTKSETFTQPSTTIQSFNSIGVQDEHTDINFYRYTY 132
           ++SC+ +S+ +LH      +P +  T + T T P+  + S  ++ + D    +   + T+
Sbjct: 513 MESCVKISMNALHRPYRLCIPIFPTTATPTPTAPTPRVLS-TALAMWDIQETVYTAQLTF 571

Query: 131 ID 126
           ID
Sbjct: 572 ID 573


>SB_56622| Best HMM Match : ImpA-rel_N (HMM E-Value=1)
          Length = 529

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = -2

Query: 250 RATTVLSQKHSRSRPQLYKASTQSAYKTNIQTLTFIDIHI*MDRCLTNHATY 95
           R  T L+   +R R   Y A    A+KT+++TLT++  H    R LT  AT+
Sbjct: 336 RTLTYLAAHKTRLRTLTYLA----AHKTHVRTLTYLAAHKTRLRTLTYLATH 383


>SB_44066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -2

Query: 298 SLCRYHRSTRHSRATYRATTVLSQKHSRSRPQLYKASTQSAYKTNIQTLTF 146
           SL RYH  TR    TY  + V   + +R R   Y +  +    T  +T+T+
Sbjct: 62  SLSRYHHGTRDRTMTYH-SRVKHHQGTRDRTITYHSRGKHTQGTRDRTMTY 111


>SB_534| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 948

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = -2

Query: 250 RATTVLSQKHSRSRPQLYKASTQSAYKTNIQTLTFIDIHI*MDRCLTNHATY 95
           R  T L+   +R R   Y A    A+KT+++TLT++  H    R LT  AT+
Sbjct: 556 RTLTYLAAHKTRLRTLTYLA----AHKTHVRTLTYLAAHKTRLRTLTYLATH 603


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,354,672
Number of Sequences: 59808
Number of extensions: 369652
Number of successful extensions: 953
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)