Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30034
(606 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6L4B3 Cluster: Polyprotein, putative; n=6; core eudico... 46 7e-04
UniRef50_UPI0000E48520 Cluster: PREDICTED: similar to endonuclea... 41 0.020
UniRef50_Q1AKH8 Cluster: Reverse transcriptase family member; n=... 40 0.046
UniRef50_O97916 Cluster: Reverse transcriptase-like; n=70; Bos t... 40 0.046
UniRef50_Q4SRF1 Cluster: Chromosome undetermined SCAF14527, whol... 38 0.14
UniRef50_UPI0000E490F6 Cluster: PREDICTED: similar to endonuclea... 37 0.32
UniRef50_UPI0000E4898C Cluster: PREDICTED: similar to fibropelli... 36 0.98
UniRef50_UPI0000E4800E Cluster: PREDICTED: similar to protein F2... 36 0.98
UniRef50_UPI0000E48997 Cluster: PREDICTED: similar to reverse tr... 34 2.3
UniRef50_UPI0000E4958A Cluster: PREDICTED: similar to endonuclea... 34 3.0
UniRef50_A1TQM0 Cluster: Helicase domain protein; n=3; Comamonad... 33 5.2
UniRef50_A2FU24 Cluster: F5/8 type C domain containing protein; ... 33 6.9
>UniRef50_Q6L4B3 Cluster: Polyprotein, putative; n=6; core
eudicotyledons|Rep: Polyprotein, putative - Solanum
demissum (Wild potato)
Length = 868
Score = 46.0 bits (104), Expect = 7e-04
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = -3
Query: 595 HVMRRNDNELGKRALTMNMEGFR-GRGRLKKKWMDCVKGDMCKRGVSEEMVYDRGVWKEK 419
HV RR+ + +R M +EG R GRGR KK W + ++ D+ ++E+M DR W+ +
Sbjct: 627 HVKRRSADAPVRRCEVMVVEGTRRGRGRPKKYWEEVIRQDLAMLHITEDMTLDRKEWRSR 686
>UniRef50_UPI0000E48520 Cluster: PREDICTED: similar to
endonuclease-reverse transcriptase; n=2;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
endonuclease-reverse transcriptase - Strongylocentrotus
purpuratus
Length = 958
Score = 41.1 bits (92), Expect = 0.020
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = -3
Query: 595 HVMRRNDNELGKRALTMNMEGFRGRGRLKKKWMDCVKGDMCKRGV-----SEEMVYDRGV 431
H+ R N L N+ G R RGR K+W DC+K D R V + + DR V
Sbjct: 865 HINRMNSKRYPHILLNGNIHGKRPRGRPAKRWTDCIKADCKNRQVDSLTKATRLTEDRKV 924
Query: 430 WK 425
W+
Sbjct: 925 WQ 926
>UniRef50_Q1AKH8 Cluster: Reverse transcriptase family member; n=6;
Papilionoideae|Rep: Reverse transcriptase family member
- Glycine max (Soybean)
Length = 377
Score = 39.9 bits (89), Expect = 0.046
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = -3
Query: 595 HVMRRNDNELGKRALTMNM-EGFRGRGRLKKKWMDCVKGDMCKRGVSEEMVYDRGVWKEK 419
HV RR + + +R M + RGRGR KK + +K D+ G+ MV DR +W++
Sbjct: 311 HVERRPVDSVLRRVDQMERRQTIRGRGRPKKTIREVIKKDLEINGLDRSMVLDRTLWRKL 370
Query: 418 ACCIDP 401
DP
Sbjct: 371 IHVADP 376
>UniRef50_O97916 Cluster: Reverse transcriptase-like; n=70; Bos
taurus|Rep: Reverse transcriptase-like - Bos taurus
(Bovine)
Length = 335
Score = 39.9 bits (89), Expect = 0.046
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = -3
Query: 595 HVMRRNDNELGKRALTMNMEGFRGRGRLKKKWMDCVKGDM-CKRGVSEEMVYDRGVWKEK 419
H+MRR D+ L K + +EG R RGR + +W+D + M G E+V DR W
Sbjct: 264 HLMRRADS-LEKTLMLGKIEGRRRRGRQRMRWLDGIINSMDMGLGGLRELVMDRETWCAV 322
Query: 418 AC 413
C
Sbjct: 323 VC 324
>UniRef50_Q4SRF1 Cluster: Chromosome undetermined SCAF14527, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF14527,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 52
Score = 38.3 bits (85), Expect = 0.14
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = -3
Query: 589 MRRNDNEL-GKRALTMNMEGFRGRGRLKKKWMDCVKGDMCKRGVSEE 452
M R + E G+R L + + G R RGR K+++MD VK DM G EE
Sbjct: 1 MSRGEMEKDGRRMLRLELPGRRPRGRTKRRFMDVVKEDMKVVGAREE 47
>UniRef50_UPI0000E490F6 Cluster: PREDICTED: similar to
endonuclease-reverse transcriptase; n=5;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
endonuclease-reverse transcriptase - Strongylocentrotus
purpuratus
Length = 1030
Score = 37.1 bits (82), Expect = 0.32
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = -3
Query: 595 HVMRRNDNELGKRALTMNMEGFRGRGRLKKKWMDCVKGDMCKRGV-----SEEMVYDRGV 431
HV+R K A+ + G R RGR K+W+DC+ D R + + + DR
Sbjct: 952 HVLRMKPTRYPKIAVEGKVTGNRPRGRPPKRWLDCISEDCKARSIPRLTDASRLAADRKT 1011
Query: 430 W 428
W
Sbjct: 1012 W 1012
>UniRef50_UPI0000E4898C Cluster: PREDICTED: similar to fibropellin
Ia; n=2; Strongylocentrotus purpuratus|Rep: PREDICTED:
similar to fibropellin Ia - Strongylocentrotus
purpuratus
Length = 1096
Score = 35.5 bits (78), Expect = 0.98
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Frame = -3
Query: 553 LTMNMEGFRGRGRLKKKWMDCVKGDMCKRGV-----SEEMVYDRGVWK 425
L N+ G RGR K+W DC+K D R V + + DR VW+
Sbjct: 18 LNENVHGKHPRGRPAKRWTDCIKADCNNRQVDSLTKATRLTEDRKVWR 65
>UniRef50_UPI0000E4800E Cluster: PREDICTED: similar to protein
F28E10.3 [imported] - Caenorhabditis elegans; n=4;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
protein F28E10.3 [imported] - Caenorhabditis elegans -
Strongylocentrotus purpuratus
Length = 824
Score = 35.5 bits (78), Expect = 0.98
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = -3
Query: 595 HVMRRNDNELGKRALT--MNMEGFRGRGRLKKKWMDCVKGDMCKRGVSEEMVYDRGVWKE 422
H+ RRNDN A+T EG R RGR +K+W D ++ + ++ + +RG+W
Sbjct: 367 HISRRNDNRWSS-AITHWTPYEGKRNRGRQRKRWRDELQQFWGQTNWHQQAL-NRGIWNH 424
Query: 421 KA 416
A
Sbjct: 425 HA 426
>UniRef50_UPI0000E48997 Cluster: PREDICTED: similar to reverse
transcriptase-like; n=6; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to reverse
transcriptase-like - Strongylocentrotus purpuratus
Length = 415
Score = 34.3 bits (75), Expect = 2.3
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -3
Query: 595 HVMRRNDNELGKRALTMNMEGFRGRGRLKKKWMDCVK 485
H++R + + L + + +EG R RGR +K+W D +K
Sbjct: 337 HILRGSGSPLAAQIIESQVEGKRKRGRQRKQWFDNIK 373
>UniRef50_UPI0000E4958A Cluster: PREDICTED: similar to
endonuclease-reverse transcriptase, partial; n=7;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
endonuclease-reverse transcriptase, partial -
Strongylocentrotus purpuratus
Length = 787
Score = 33.9 bits (74), Expect = 3.0
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -3
Query: 595 HVMRRNDNELGKRALTMNMEGFRGRGRLKKKWMDCVKGDM-CKRGVSEEMVYDRGVW 428
HV+R + L +A + G R RGR K+W D V+ D+ +E+ DR W
Sbjct: 452 HVLRMPHHRLPYQAFQNDFNGRRPRGRPPKRWKDQVQYDVGLSTQEAEQRAQDRSDW 508
>UniRef50_A1TQM0 Cluster: Helicase domain protein; n=3;
Comamonadaceae|Rep: Helicase domain protein - Acidovorax
avenae subsp. citrulli (strain AAC00-1)
Length = 709
Score = 33.1 bits (72), Expect = 5.2
Identities = 23/79 (29%), Positives = 37/79 (46%)
Frame = -3
Query: 601 MEHVMRRNDNELGKRALTMNMEGFRGRGRLKKKWMDCVKGDMCKRGVSEEMVYDRGVWKE 422
M ++R + LG+ L +GF G + K D +KG M +R S+ ++ D G
Sbjct: 435 MHTLLRITGHALGQLPLGDFRKGFAGTAEKRAKLADAIKGWMIRR--SKAVLSDLGKKDR 492
Query: 421 KACCIDPR*LGEGQENYED 365
+ + P LG +E Y D
Sbjct: 493 QLRYLSPEGLGTYREIYRD 511
>UniRef50_A2FU24 Cluster: F5/8 type C domain containing protein;
n=2; Trichomonas vaginalis G3|Rep: F5/8 type C domain
containing protein - Trichomonas vaginalis G3
Length = 2104
Score = 32.7 bits (71), Expect = 6.9
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = -3
Query: 388 EGQENYEDDVKSYTYFVNTSIGDWTTTNKFHHKIFNPTSQYNK 260
E + Y+ V TY NT G WT NKF HK F+P S Y++
Sbjct: 305 EKYQVYDPSVSGTTY--NTE-GFWTFNNKFPHK-FSPPSDYSR 343
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 578,992,957
Number of Sequences: 1657284
Number of extensions: 11335988
Number of successful extensions: 23619
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 22979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23617
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43147568152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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