Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30034
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.08 |pof4||elongin-A, F-box protein Pof4|Schizosaccharom...    29   0.53 
SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces pomb...    26   4.9  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    25   6.5  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    25   6.5  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   6.5  

>SPBC29A3.08 |pof4||elongin-A, F-box protein
           Pof4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 199

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -3

Query: 598 EHVMRRNDNELGKRALTMNMEGFRG-RGRLKKK 503
           +HV+R    EL KR +  N++ +RG  G+LKKK
Sbjct: 62  DHVLRDFGLELQKRTILNNIDDWRGLYGKLKKK 94


>SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -3

Query: 370 EDDVKSYTYFVNTSIGDWTTTNKFHHKIFN 281
           E D   +   +++++G WTTT +   +IF+
Sbjct: 67  EGDYMCFVQLIHSNLGSWTTTAQSTCRIFD 96


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 601 MEHVMRRN-DNELGKRALTMNMEGFRGRGRLKKKWMDCVKGDMCK 470
           ME + R+  D EL +    +     +G G ++K+W D V GD+ K
Sbjct: 226 MEDIKRKKQDQELNESPCYV----LQGTGFVEKQWKDVVVGDIVK 266


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 370 HNFPALLPVTWGRCNMLSPSILLYHTPFPRSLPFYTYRL 486
           H F   L +   RCN +   I +    FP  LPF  +R+
Sbjct: 661 HTFNRPLVLGQLRCNGVLEGIRITRAGFPNRLPFNDFRV 699


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 367 PHNFPALLPVTWGRCNMLSPSILLYHTPFPRSLPFYTYR 483
           PHN    L +   RCN +   I +  T FP  L +  +R
Sbjct: 672 PHNLDKSLVLHQLRCNGVLEGIRIAQTGFPNKLFYTEFR 710


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,516,210
Number of Sequences: 5004
Number of extensions: 51834
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)