Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30034
         (606 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22184| Best HMM Match : PHD (HMM E-Value=0.00011)                   33   0.24 
SB_36818| Best HMM Match : RVT_1 (HMM E-Value=8e-35)                   29   2.9  
SB_10620| Best HMM Match : zf-C2H2 (HMM E-Value=0.012)                 29   2.9  
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_8130| Best HMM Match : RVT_1 (HMM E-Value=8e-35)                    29   2.9  
SB_56454| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_9061| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.7  
SB_31784| Best HMM Match : RVT_1 (HMM E-Value=2e-35)                   27   8.9  
SB_57033| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_6541| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.9  

>SB_22184| Best HMM Match : PHD (HMM E-Value=0.00011)
          Length = 634

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 541 MEGFRGRGRLKKKWMDCVKGDMCKRGVSEEMVYDRGVWKEK 419
           +EG R RGR +K W + ++ D+   G++     DR  WK K
Sbjct: 581 IEGKRTRGRPRKNWHEVLREDLKLAGLTPHDTQDRVRWKLK 621


>SB_36818| Best HMM Match : RVT_1 (HMM E-Value=8e-35)
          Length = 629

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/41 (29%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = -3

Query: 595 HVMRRNDNELGKRALTMNM-EGFRGRGRLKKKWMDCVKGDM 476
           HV+R  ++ + ++ L   +  G+R +GR KK++ D +K ++
Sbjct: 507 HVIRMEESRIPRQVLYSELASGYRKKGRPKKRYKDNLKSNL 547


>SB_10620| Best HMM Match : zf-C2H2 (HMM E-Value=0.012)
          Length = 159

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/41 (29%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = -3

Query: 595 HVMRRNDNELGKRALTMNM-EGFRGRGRLKKKWMDCVKGDM 476
           HV+R  ++ + ++ L   +  G+R +GR KK++ D +K ++
Sbjct: 37  HVIRMEESRIPRQVLYSELASGYRKKGRPKKRYKDNLKSNL 77


>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3669

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/41 (29%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = -3

Query: 595  HVMRRNDNELGKRALTMNM-EGFRGRGRLKKKWMDCVKGDM 476
            HV+R  ++ + ++ L   +  G+R +GR KK++ D +K ++
Sbjct: 3277 HVIRMEESRIPRQVLYSELASGYRKKGRPKKRYKDNLKSNL 3317


>SB_8130| Best HMM Match : RVT_1 (HMM E-Value=8e-35)
          Length = 869

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/41 (29%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = -3

Query: 595 HVMRRNDNELGKRALTMNM-EGFRGRGRLKKKWMDCVKGDM 476
           HV+R  ++ + ++ L   +  G+R +GR KK++ D +K ++
Sbjct: 786 HVIRMEESRIPRQVLYSELASGYRKKGRPKKRYKDNLKSNL 826


>SB_56454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 534

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 595 HVMRRNDNELGKRALTMNME-GFRGRGRLKKKWMDCVKG 482
           HV R +D  + K+ L   +  G R +G  KK++ D +KG
Sbjct: 450 HVRRMSDTRIPKQLLYGELHYGTRSKGGQKKRYKDTLKG 488


>SB_9061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -3

Query: 568 LGKRALTMNMEGFRGRG--RLKKKWMDCVKGDMCKRGVSEEMV 446
           LG   L  N EG R RG  R  +KW   V  D+  RG+ + ++
Sbjct: 61  LGVPPLRANREGQRMRGVERRARKWFALVLSDIAARGLVQNIL 103


>SB_31784| Best HMM Match : RVT_1 (HMM E-Value=2e-35)
          Length = 963

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/41 (26%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -3

Query: 595 HVMRRNDNELGKRALTMNM-EGFRGRGRLKKKWMDCVKGDM 476
           HV+R  ++ + ++     +  G+R +GR KK++ D +K ++
Sbjct: 841 HVIRMEESRIPRQVFYSELASGYRKKGRPKKRYKDNLKSNL 881


>SB_57033| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 686

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/41 (26%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -3

Query: 595 HVMRRNDNELGKRALTMNM-EGFRGRGRLKKKWMDCVKGDM 476
           HV+R  ++ + ++     +  G+R +GR KK++ D +K ++
Sbjct: 512 HVIRMEESRIPRQVFYSELASGYRKKGRPKKRYKDNLKSNL 552


>SB_6541| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 801

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/41 (26%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -3

Query: 595 HVMRRNDNELGKRALTMNM-EGFRGRGRLKKKWMDCVKGDM 476
           HV+R  ++ + ++     +  G+R +GR KK++ D +K ++
Sbjct: 679 HVIRMEESRIPRQVFYRELASGYRKKGRPKKRYKDNLKSNL 719


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,353,049
Number of Sequences: 59808
Number of extensions: 375413
Number of successful extensions: 1045
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)