Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30031
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    26   3.4  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   5.9  

>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 9/27 (33%), Positives = 20/27 (74%)
 Frame = +1

Query: 256 RVVYYKSYYIFLYTVLATLLLSREIVS 336
           RV+YYK +++ L T+++  L S ++++
Sbjct: 379 RVLYYKDFFMDLSTIISNFLPSMKLLA 405


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -2

Query: 274  FYNILLLIXVCSVLAHPHYSYPFT*NTRIYGNHFCLVPNVISVNNDVSN 128
            F +I  +I  C +   P     FT       +H  L+P V+ VNND  N
Sbjct: 1734 FVDIYSVILECFLAIQPRSFPAFTFAWLSLISHSYLLPKVLLVNNDKIN 1782


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,053,394
Number of Sequences: 5004
Number of extensions: 37104
Number of successful extensions: 71
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)