Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30031
         (566 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g05200.1 68417.m00783 protein kinase family protein contains ...    28   3.8  
At2g07687.1 68415.m00937 cytochrome c oxidase subunit 3 identica...    28   5.0  

>At4g05200.1 68417.m00783 protein kinase family protein contains
           Prosite:PS00108: Serine/Threonine protein kinases
           active-site signature
          Length = 675

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 14/64 (21%), Positives = 31/64 (48%)
 Frame = -2

Query: 295 CIKIYNNFYNILLLIXVCSVLAHPHYSYPFT*NTRIYGNHFCLVPNVISVNNDVSNTDVG 116
           C K   + +++ L + + +V + P Y Y    NT  Y  +   + N+ +V + +S+ +  
Sbjct: 4   CFKSSVSLFSVFLFMILKTVTSDPTYLYHICPNTTTYSRNSSYLTNLRTVLSSLSSPNAA 63

Query: 115 MLTL 104
             +L
Sbjct: 64  YASL 67


>At2g07687.1 68415.m00937 cytochrome c oxidase subunit 3 identical
           to cytochrome c oxidase subunit 3 (GI:15215914)
           [Arabidopsis thaliana]; similar to Cytochrome c oxidase
           polypeptide III (EC 1.9.3.1) (Swiss-Prot:P92514)
           [Arabidopsis thaliana]
          Length = 265

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
 Frame = -2

Query: 367 IYFANTPRLTS*QSRVTTT---MLPGRCIK-IYNNFYNILLLIXVCSVLAHPHYSYPFT* 200
           I F NTP L S  + VT     +L G+  + +Y     +LL +         +Y  PFT 
Sbjct: 132 IPFLNTPILPSSGAAVTWAHHAILAGKEKRAVYALVATVLLALVFTGFQGMEYYQAPFTI 191

Query: 199 NTRIYGNHFCL 167
           +  IYG+ F L
Sbjct: 192 SDSIYGSTFFL 202


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,280,805
Number of Sequences: 28952
Number of extensions: 176897
Number of successful extensions: 261
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)