Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30027
         (323 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc...    25   2.8  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    25   3.7  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    24   4.9  
SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy...    24   6.5  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    23   8.6  

>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 313 ASKPERIGSTVLLPQMSYVSVRSLGQPLYNETSTS 209
           + K +R+GST + P+MS      +   LY +TSTS
Sbjct: 283 SGKGQRLGSTYMQPRMS-----QMPGGLYTDTSTS 312


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 10/20 (50%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
 Frame = +2

Query: 113 FQDYLT-ASISGYRKLDNII 169
           ++DY T +S+ GY+K+DN I
Sbjct: 246 WEDYSTLSSVRGYKKVDNYI 265


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 264 HTYQLEVWDSRYIMRLRPH 208
           H  Q E+ + +Y+ R RPH
Sbjct: 430 HDQQFEIINGKYVRRERPH 448


>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 265 SYVSVRSLGQPLYNETSTSCLKA 197
           SY+    LG+P YN T    +K+
Sbjct: 70  SYIPPLELGKPFYNSTVAKVVKS 92


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +2

Query: 269 LRQQYCATYPFGLTCLL 319
           + ++ C  YPFG+ C++
Sbjct: 603 ISRKRCERYPFGILCII 619


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,253,142
Number of Sequences: 5004
Number of extensions: 22137
Number of successful extensions: 61
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)