Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30027
         (323 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36536| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.6  
SB_27105| Best HMM Match : GDC-P (HMM E-Value=0)                       27   2.6  
SB_29856| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_10487| Best HMM Match : FGF (HMM E-Value=1.4e-06)                   26   6.1  

>SB_36536| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 315  RQVSPNG*VAQYCCRKCHTYQLEVWDSRYI 226
            R V+ +   A++ CRKC+T+  E  D R +
Sbjct: 1111 RDVNQHTATARFYCRKCNTFACEACDFRCV 1140


>SB_27105| Best HMM Match : GDC-P (HMM E-Value=0)
          Length = 767

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -2

Query: 292 GSTVLLPQMSYVSVRSLG-QPLYNETSTSCLKAHHETFIINEYYVV*LPVAGYAGGQIVL 116
           GS+ +LP +S+  ++ +G + L   T  + L A++    + +YY V     GY   + +L
Sbjct: 578 GSSAILP-ISWAYIKLMGGKGLRKATEVAILNANYMAARLKDYYAVLFVGDGYCAHEFIL 636


>SB_29856| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 405

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 279 CCRKCHTYQLEVWDSRYIMRLRPHVSKLTMRHSLSMNIM 163
           C R  H YQL+  D   ++  +P +S L +   LS + +
Sbjct: 308 CTRSHHQYQLDYLDESIVLDCKP-ISPLDLEQPLSFSYL 345


>SB_10487| Best HMM Match : FGF (HMM E-Value=1.4e-06)
          Length = 617

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 240 DSRYIMRLRPHVSKLTMRHSLSM 172
           D ++I + R H  K+ MRHSL++
Sbjct: 80  DKQHIHQRRQHCEKVLMRHSLAL 102


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,320,728
Number of Sequences: 59808
Number of extensions: 163213
Number of successful extensions: 371
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 438034835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)