Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30027
         (323 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74041-5|CAA98516.2|  354|Caenorhabditis elegans Hypothetical pr...    27   2.3  
Z70780-11|CAC35815.1|  138|Caenorhabditis elegans Hypothetical p...    26   7.2  
AL110500-14|CAB54476.1|  234|Caenorhabditis elegans Hypothetical...    26   7.2  
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>Z74041-5|CAA98516.2|  354|Caenorhabditis elegans Hypothetical
           protein T03F7.2 protein.
          Length = 354

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +2

Query: 77  CVGLLPSTLPLIF---QDYLTASISGYRKLDNIIFIDNECLMV 196
           C+G+L  +LP++F   Q YL  S    R +  IIF     L V
Sbjct: 123 CLGMLALSLPILFENRQRYLVNSFKITRPISRIIFYGFNVLFV 165


>Z70780-11|CAC35815.1|  138|Caenorhabditis elegans Hypothetical
           protein F46B6.12 protein.
          Length = 138

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -3

Query: 114 KIKGSVDGKSPTHWSDVMVKE-LKVPMSKNQS 22
           K+K +  G++P HW  V++ E L VP S+ ++
Sbjct: 2   KLKCTNCGEAPDHWQYVVLNEMLDVPGSRGEA 33


>AL110500-14|CAB54476.1|  234|Caenorhabditis elegans Hypothetical
           protein Y87G2A.14 protein.
          Length = 234

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -2

Query: 196 HHETFIINEYYVV 158
           HH TF+I+E+Y+V
Sbjct: 150 HHSTFLIDEFYMV 162


>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical
           protein F30H5.3 protein.
          Length = 1599

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 207 HEVEVSLYNGCPKLLTDTYDICGSNTV 287
           +E   +L N CP     TYD   SN+V
Sbjct: 850 YECNAALSNSCPTNFACTYDQLSSNSV 876


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,944,541
Number of Sequences: 27780
Number of extensions: 125315
Number of successful extensions: 295
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)