Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30027
         (323 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   0.70 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   3.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   3.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   3.7  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    20   8.6  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    20   8.6  

>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 23.4 bits (48), Expect = 0.70
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 280 LLPQMSYVSVRSLGQPLYNETSTSCLKAHHETFIIN 173
           ++  + +VSV   G  +Y   ST  L+     F+IN
Sbjct: 24  VIGMLGFVSVMGNGMVVYIFLSTKSLRTPSNLFVIN 59


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 90  YRLHCP*FFKTI*PPAYPATGS 155
           YRL+ P   ++   P YP+T S
Sbjct: 426 YRLYNPALIQSQPSPQYPSTSS 447


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 51  LKVPMSKNQSEDHSKRK 1
           L  P+SK + ++H K+K
Sbjct: 61  LPQPISKRKDKEHKKKK 77


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 51  LKVPMSKNQSEDHSKRK 1
           L  P+SK + ++H K+K
Sbjct: 61  LPQPISKRKDKEHKKKK 77


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +2

Query: 149 RKLDNIIFIDNECLMVSFE 205
           R+ ++ IF+  +CL+ + E
Sbjct: 118 RRYEDNIFLPEDCLLFTIE 136


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +2

Query: 149 RKLDNIIFIDNECLMVSFE 205
           R+ ++ IF+  +CL+ + E
Sbjct: 133 RRYEDNIFLPEDCLLFTIE 151


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,805
Number of Sequences: 438
Number of extensions: 1642
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7093251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)