Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30027
(323 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g14940.1 68416.m01890 phosphoenolpyruvate carboxylase, putati... 29 0.54
At3g42100.1 68416.m04322 AT hook motif-containing protein-relate... 29 0.94
At1g67960.1 68414.m07763 expressed protein AT-AC non-consensus s... 29 0.94
At4g28490.1 68417.m04076 leucine-rich repeat transmembrane prote... 27 3.8
At3g09400.1 68416.m01116 protein phosphatase 2C family protein /... 27 3.8
At1g64400.1 68414.m07299 long-chain-fatty-acid--CoA ligase, puta... 26 6.7
At1g33930.1 68414.m04205 avirulence-responsive family protein / ... 26 6.7
At1g33830.1 68414.m04187 avirulence-responsive family protein / ... 26 6.7
At5g45275.1 68418.m05557 expressed protein Requires functional a... 25 8.8
At4g19450.1 68417.m02861 nodulin-related weak similarity to nodu... 25 8.8
At1g53310.1 68414.m06042 phosphoenolpyruvate carboxylase, putati... 25 8.8
At1g33870.1 68414.m04199 avirulence-responsive protein, putative... 25 8.8
At1g31470.1 68414.m03853 nodulin-related weak similarity to nodu... 25 8.8
>At3g14940.1 68416.m01890 phosphoenolpyruvate carboxylase, putative
/ PEP carboxylase, putative strong similarity to
SP|P29196 Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
(PEPCASE) {Solanum tuberosum}; contains Pfam profile
PF00311: phosphoenolpyruvate carboxylase
Length = 968
Score = 29.5 bits (63), Expect = 0.54
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -3
Query: 267 CHTYQLE-VWDSRYIMRLRPHVSKLTMRHSLS 175
C Y L+ + D+ Y + LRPH+SK M+ S S
Sbjct: 901 CQAYTLKRIRDANYNVTLRPHISKEIMQSSKS 932
>At3g42100.1 68416.m04322 AT hook motif-containing protein-related
very low similarity to SP|Q9UUA2 DNA repair and
recombination protein pif1, mitochondrial precursor
{Schizosaccharomyces pombe}; weak hit to Pfam profile
PF02178: AT hook motif
Length = 1752
Score = 28.7 bits (61), Expect = 0.94
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 277 LPQMSYVSVRSLGQPLYNETSTSCLKAHHETFIINE 170
LP M S G+ NE++TSC+ H +T + E
Sbjct: 123 LPSMGLSSATGKGKASQNESTTSCMFFHKQTTLQTE 158
>At1g67960.1 68414.m07763 expressed protein AT-AC non-consensus
splice sites at intron 6
Length = 624
Score = 28.7 bits (61), Expect = 0.94
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 111 IKGSVDGKSPTHWSDVMVKELKVPMSKNQSE 19
+ GSVDG + WSD + + K+ M + E
Sbjct: 136 VNGSVDGSNDERWSDTLSSDKKLYMEETSVE 166
>At4g28490.1 68417.m04076 leucine-rich repeat transmembrane protein
kinase, putative
Length = 999
Score = 26.6 bits (56), Expect = 3.8
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 12/58 (20%)
Frame = +2
Query: 44 TLSSLTITSDQCVGLLPSTL----PLIFQDY--------LTASISGYRKLDNIIFIDN 181
TLS L + +++ G+LPS L PL + D + A++ G KL+ +I IDN
Sbjct: 332 TLSELKLFNNRLTGVLPSQLGANSPLQYVDLSYNRFSGEIPANVCGEGKLEYLILIDN 389
Score = 25.8 bits (54), Expect = 6.7
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +2
Query: 17 SSD*FFDIGTLSSLTITSDQCVGLLPSTLPLIFQDYLTASISGYRKLDNI 166
S+D F L SL ++ + VG +P +LP + ISG D I
Sbjct: 106 SADDFDTCHNLISLDLSENLLVGSIPKSLPFNLPNLKFLEISGNNLSDTI 155
>At3g09400.1 68416.m01116 protein phosphatase 2C family protein /
PP2C family protein similar to protein phosphatase-2c
(GI:3608412) [Mesembryanthemum crystallinum]; contains
Pfam PF00481 : Protein phosphatase 2C domain
Length = 650
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 258 YQLEVWDSRYIMRLRPHVSKLTMRHSL 178
Y + V DSR ++ RP+V K+ M+ L
Sbjct: 423 YVMSVGDSRAVLARRPNVEKMKMQKEL 449
>At1g64400.1 68414.m07299 long-chain-fatty-acid--CoA ligase,
putative / long-chain acyl-CoA synthetase, putative
similar to GI:1617270 (MF7P) from [Brassica napus]
Length = 665
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 88 LTVYTALNFSRLSDRQHIRLPEVRQHNI 171
LT+Y+ F +L + +H LPE R+ ++
Sbjct: 198 LTIYSWDQFLKLGEGKHYELPEKRRSDV 225
>At1g33930.1 68414.m04205 avirulence-responsive family protein /
avirulence induced gene (AIG1) family protein similar to
SP|P54120 AIG1 protein {Arabidopsis thaliana}; contains
Pfam profile PF04548: AIG1 family
Length = 336
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 213 VEVSLYNGCPKLLTDTYDICGSNTVL 290
+E L NGCP+ L + +CG V+
Sbjct: 173 LEDYLSNGCPEFLKNVLRLCGGRRVV 198
>At1g33830.1 68414.m04187 avirulence-responsive family protein /
avirulence induced gene (AIG1) family protein similar to
AIG1 protein SP:P54120 (Arabidopsis thaliana); contains
Pfam profile: PF00735 cell division protein (members of
this family bind GTP)
Length = 225
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 225 LYNGCPKLLTDTYDICGSNTVL 290
L GCP+ LT +CG VL
Sbjct: 150 LREGCPEFLTRVLKLCGGRKVL 171
>At5g45275.1 68418.m05557 expressed protein Requires functional
assignment.
Length = 570
Score = 25.4 bits (53), Expect = 8.8
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -1
Query: 167 LCCLTSGSRICW 132
LCCL +G ICW
Sbjct: 106 LCCLLAGLSICW 117
>At4g19450.1 68417.m02861 nodulin-related weak similarity to
nodule-specific protein Nlj70 [Lotus japonicus]
GI:3329366
Length = 572
Score = 25.4 bits (53), Expect = 8.8
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -1
Query: 167 LCCLTSGSRICW 132
LCCL +G ICW
Sbjct: 106 LCCLLAGLSICW 117
>At1g53310.1 68414.m06042 phosphoenolpyruvate carboxylase, putative
/ PEP carboxylase, putative (PPC1) strong similarity to
SP|P29196 Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
(PEPCASE) {Solanum tuberosum}; contains Pfam profile
PF00311: phosphoenolpyruvate carboxylase
Length = 967
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = -3
Query: 267 CHTYQLE-VWDSRYIMRLRPHVSK 199
C Y L+ + D Y + LRPH+SK
Sbjct: 900 CQAYTLKRIRDPSYHVTLRPHISK 923
>At1g33870.1 68414.m04199 avirulence-responsive protein, putative /
avirulence induced gene protein, putative / AIG protein,
putative similar to SP|P54120 AIG1 protein {Arabidopsis
thaliana}; contains Pfam profile PF04548: AIG1 family
Length = 252
Score = 25.4 bits (53), Expect = 8.8
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +3
Query: 234 GCPKLLTDTYDICGSNTVL 290
GCPK LT +CG V+
Sbjct: 121 GCPKFLTGVLRLCGGRKVV 139
>At1g31470.1 68414.m03853 nodulin-related weak similarity to
nodule-specific protein Nlj70 [Lotus japonicus]
GI:3329366
Length = 546
Score = 25.4 bits (53), Expect = 8.8
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -1
Query: 167 LCCLTSGSRICW 132
LCCL +G ICW
Sbjct: 106 LCCLLAGLSICW 117
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,412,006
Number of Sequences: 28952
Number of extensions: 112419
Number of successful extensions: 253
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 360538848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -