Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30026
         (311 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC186.06 |||human MAWBP homolog|Schizosaccharomyces pombe|chr ...    24   6.1  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    23   8.1  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    23   8.1  

>SPAC186.06 |||human MAWBP homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 184

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 184 LFESVPKGSLE*VLVFHIYNQDIESLVLKASSCICHGTHQ 65
           +FE   K SL  V +F +YN     L    S C  HG ++
Sbjct: 74  IFECCSKNSLTGVQIFGMYNDGTYEL---RSFCPVHGVNE 110


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 169 ARFQIVRSLPPI-RNAVSPLITTGKLLKSRYYLSD 270
           A F  V +LPPI + A + L     LLK +YY +D
Sbjct: 72  AHFDAV-ALPPIPKGAPNFLADVLNLLKKKYYATD 105


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 52  QFEFSGASHDRCSYSLLRLSFLYPGCRYGI 141
           Q   SG  +DR SY  + L      C YG+
Sbjct: 172 QCVLSGKVYDRASYDFINLGPESTVCLYGV 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,185,078
Number of Sequences: 5004
Number of extensions: 19775
Number of successful extensions: 35
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)