Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30026
(311 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0) 27 3.1
SB_1618| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11) 26 5.4
SB_47771| Best HMM Match : Annexin (HMM E-Value=0) 26 5.4
SB_47354| Best HMM Match : RVT_1 (HMM E-Value=2e-07) 26 5.4
SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10) 26 5.4
SB_35833| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.4
SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31) 26 5.4
SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20) 26 5.4
SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29) 26 5.4
SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34) 26 5.4
SB_4338| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.4
SB_58114| Best HMM Match : DUF1478 (HMM E-Value=3) 26 5.4
SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.4
SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.4
SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.4
SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.4
SB_2999| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31) 26 5.4
SB_43726| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-31) 26 7.2
SB_22738| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
>SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1858
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 216 FTADNYREVTQVTLLSKRLER 278
F NYR +T V LSK LER
Sbjct: 60 FIYPNYRPITNVAFLSKTLER 80
>SB_1618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1371
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +1
Query: 214 VSPLITTGKLLKSRYYLSD*KDF--KPTHRQHLC 309
VSP TGK L Y++ + KD KP H + C
Sbjct: 1051 VSPCTQTGKSLDEDYFVDEPKDLLGKPFHYKSSC 1084
>SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11)
Length = 1175
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 228 NYREVTQVTLLSKRLER 278
NYR +T V LSK LER
Sbjct: 480 NYRPITNVAFLSKTLER 496
>SB_47771| Best HMM Match : Annexin (HMM E-Value=0)
Length = 529
Score = 26.2 bits (55), Expect = 5.4
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = +1
Query: 31 CTLMTMTQFEFSGASHDRCSYSLLRLSFLYPGCRYGIQGLIQ-VNL*ARFQIVRSLPPIR 207
C ++ E +G HD + S L+ +G+ G ++ + Q +RSL P R
Sbjct: 450 CDILETIDDELTGDYHDAVKAIGMLASVLHGNITFGVAGTLKSPRVILDNQRIRSLDPSR 509
Query: 208 NAVSPLITTG 237
N P G
Sbjct: 510 NDFYPNTNEG 519
>SB_47354| Best HMM Match : RVT_1 (HMM E-Value=2e-07)
Length = 773
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 228 NYREVTQVTLLSKRLER 278
NYR +T V LSK LER
Sbjct: 355 NYRPITNVAFLSKTLER 371
>SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10)
Length = 549
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 228 NYREVTQVTLLSKRLER 278
NYR +T V LSK LER
Sbjct: 484 NYRPITNVAFLSKTLER 500
>SB_35833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1032
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -2
Query: 145 LVFHIYNQDIESLVLKASSCICHGTHQRTQI 53
L I++QD+++ L+A I GT ++TQ+
Sbjct: 851 LALLIHHQDLDTAALRAVGNIVTGTDEQTQV 881
>SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31)
Length = 1273
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 228 NYREVTQVTLLSKRLER 278
NYR +T V LSK LER
Sbjct: 213 NYRPITNVAFLSKTLER 229
>SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20)
Length = 1285
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 228 NYREVTQVTLLSKRLER 278
NYR +T V LSK LER
Sbjct: 1206 NYRPITNVAFLSKTLER 1222
>SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29)
Length = 605
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 228 NYREVTQVTLLSKRLER 278
NYR +T V LSK LER
Sbjct: 279 NYRPITNVAFLSKTLER 295
>SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34)
Length = 674
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -2
Query: 115 ESLVLKASSCICHG 74
E+L KASSC CHG
Sbjct: 514 EALKRKASSCFCHG 527
>SB_4338| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 541
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 228 NYREVTQVTLLSKRLER 278
NYR +T V LSK LER
Sbjct: 98 NYRPITNVAFLSKTLER 114
>SB_58114| Best HMM Match : DUF1478 (HMM E-Value=3)
Length = 231
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 228 NYREVTQVTLLSKRLER 278
NYR +T V LSK LER
Sbjct: 98 NYRPITNVAFLSKTLER 114
>SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 988
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 228 NYREVTQVTLLSKRLER 278
NYR +T V LSK LER
Sbjct: 98 NYRPITNVAFLSKTLER 114
>SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 270
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 228 NYREVTQVTLLSKRLER 278
NYR +T V LSK LER
Sbjct: 182 NYRPITNVAFLSKTLER 198
>SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 228 NYREVTQVTLLSKRLER 278
NYR +T V LSK LER
Sbjct: 98 NYRPITNVAFLSKTLER 114
>SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 228 NYREVTQVTLLSKRLER 278
NYR +T V LSK LER
Sbjct: 98 NYRPITNVAFLSKTLER 114
>SB_2999| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31)
Length = 630
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 228 NYREVTQVTLLSKRLER 278
NYR +T V LSK LER
Sbjct: 187 NYRPITNVAFLSKTLER 203
>SB_43726| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-31)
Length = 516
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/46 (30%), Positives = 18/46 (39%)
Frame = +1
Query: 13 NDIKISCTLMTMTQFEFSGASHDRCSYSLLRLSFLYPGCRYGIQGL 150
N I+ SC+ + S +H Y L S YP C G L
Sbjct: 176 NQIRTSCSSSSHDYLGSSSLAHGHAMYDSLGSSSRYPQCPPGFNPL 221
>SB_22738| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -2
Query: 172 VPKGSLE*VLVFHIYNQDIESLVLKASSCI 83
VP+GS+ L+F IY D+ + +L+ + C+
Sbjct: 78 VPQGSILGPLLFLIYIYDLPNCLLQTTPCM 107
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,918,061
Number of Sequences: 59808
Number of extensions: 144655
Number of successful extensions: 368
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 387973711
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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