Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30026
         (311 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52670.1 68416.m05802 F-box family protein contains F-box dom...    27   3.5  
At2g33230.1 68415.m04071 flavin-containing monooxygenase, putati...    27   3.5  
At1g04610.1 68414.m00455 flavin-containing monooxygenase / FMO (...    27   3.5  
At2g35460.1 68415.m04344 harpin-induced family protein / HIN1 fa...    26   6.1  
At1g05550.1 68414.m00571 expressed protein contains Pfam profile...    26   6.1  
At4g28720.1 68417.m04108 flavin-containing monooxygenase family ...    25   8.1  
At3g55270.1 68416.m06138 MAP kinase phosphatase (MKP1) identical...    25   8.1  
At1g04180.1 68414.m00408 flavin-containing monooxygenase family ...    25   8.1  

>At3g52670.1 68416.m05802 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 384

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 216 NCIANRWQRPNYLKACLKVHL 154
           N ++ +W  P Y+  CL  HL
Sbjct: 290 NVVSEKWNEPKYVPECLLSHL 310


>At2g33230.1 68415.m04071 flavin-containing monooxygenase, putative
           / FMO, putative similar to flavin-containing
           monooxygenase YUCCA3 [Arabidopsis thaliana] GI:16555356
          Length = 431

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 225 QR*NCIANRWQRPNYLKACLKVHLNK 148
           +R NCIA+ WQ   Y +  LK+HL K
Sbjct: 59  ERANCIASLWQNRTYDR--LKLHLPK 82


>At1g04610.1 68414.m00455 flavin-containing monooxygenase / FMO
           (YUCCA3) identical to gi:16555356
          Length = 437

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 225 QR*NCIANRWQRPNYLKACLKVHLNK 148
           +R NCIA+ WQ   Y +  LK+HL K
Sbjct: 64  ERANCIASLWQNRTYDR--LKLHLPK 87


>At2g35460.1 68415.m04344 harpin-induced family protein / HIN1
           family protein / harpin-responsive family protein
           similar to  harpin-induced protein hin1 ( GI:1619321)
           [Nicotiana tabacum];
          Length = 238

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +1

Query: 13  NDIKISCTLMTMTQFEFSGASHDRCSYSLLRLSFLYPGCRYGI 141
           N +K   T   +T+FEF   SH+      L  S   P  R GI
Sbjct: 79  NVVKFQVTEADLTRFEFDPRSHNLHYNISLNFSIRNPNQRLGI 121


>At1g05550.1 68414.m00571 expressed protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 425

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +1

Query: 88  SYSLLRLSFLYPGCRYGIQGLIQVNL*ARFQIVRSLPPIRNAVSPLITTGKLL 246
           S  +LR+S  +P CRY + G    NL   +   + L   R   +   T GK++
Sbjct: 302 SLKILRISVCFPTCRYAL-GFFSSNLKGIYHKTKGLMVFREEET---TEGKIM 350


>At4g28720.1 68417.m04108 flavin-containing monooxygenase family
           protein / FMO family protein similar to
           flavin-containing monooxygenases YUCCA [gi:16555352],
           YUCCA2 [gi:16555354], and YUCCA3 [gi:16555356] from
           Arabidopsis thaliana
          Length = 426

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 225 QR*NCIANRWQRPNYLKACLKVHLNK 148
           +R +CIA+ WQ+  Y +  LK+HL K
Sbjct: 52  ERADCIASLWQKRTYDR--LKLHLPK 75


>At3g55270.1 68416.m06138 MAP kinase phosphatase (MKP1) identical to
           MAP kinase phosphatase (MKP1) GI:13540262 from
           [Arabidopsis thaliana]
          Length = 534

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -2

Query: 145 LVFHIYNQDIES--LVLKASSCICHGTHQRTQIASWSSVYKKF*YRF 11
           L F I+ + IE   +   ASS   H TH   +  SWSS+  KF  RF
Sbjct: 168 LDFEIFQKAIEGGFVPTLASSNNEHETHLPARENSWSSLKCKFASRF 214


>At1g04180.1 68414.m00408 flavin-containing monooxygenase family
           protein / FMO family protein similar to
           flavin-containing monooxygenases YUCCA [gi:16555352],
           YUCCA2 [gi:16555354], and YUCCA3 [gi:16555356] from
           Arabidopsis thaliana; contains Pfam profile PF00743
          Length = 421

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 225 QR*NCIANRWQRPNYLKACLKVHLNK 148
           +R +CIA+ WQ+  Y +  LK+HL K
Sbjct: 52  ERSDCIASLWQKRTYDR--LKLHLPK 75


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,108,142
Number of Sequences: 28952
Number of extensions: 100768
Number of successful extensions: 209
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 331449360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)