Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30024
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    31   0.12 
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    27   2.6  
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom...    27   2.6  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    25   7.9  

>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 31.1 bits (67), Expect = 0.12
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +3

Query: 414 NYVAAAAPSELFLVSLMVGNKFLQDDGEDDEVICSEWAASGGMELKQLKKLE 569
           NY+       LFLV LM   KFLQD    +      W+   G+ + +L  LE
Sbjct: 76  NYIPLLCGRRLFLVCLMAATKFLQDRSFSNRA----WSRLSGLPVDKLLVLE 123


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +2

Query: 107 NVEYIKKTTGRVKVQDQGHG*S*RVFEAHYKDPILRAAAFTSVPQP 244
           N+   K T G V VQ +       +F  HYKD ILR  A   + +P
Sbjct: 670 NLAKKKSTAGFVLVQLRKLADHPMLFRIHYKDDILRQMAKAIMNEP 715


>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 39  ICNVNVPREKHLTIRIKINRAIIMSNISKRRREGSR 146
           ICNV +P    ++I ++ N A  + N+S    + SR
Sbjct: 418 ICNVLIPLTDSMSIEVQGNSAAALGNLSSNVDDYSR 453


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 462 MVGNKFLQDDGEDDEVICSEWAASG 536
           MVG       G+ DE +CS W A G
Sbjct: 672 MVGADVCGFLGDSDEELCSRWMAMG 696


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,322,643
Number of Sequences: 5004
Number of extensions: 46108
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)