Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30023
(527 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar... 28 0.99
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 27 1.3
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 25 5.3
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 25 5.3
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2... 25 9.2
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 25 9.2
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe... 25 9.2
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch... 25 9.2
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 25 9.2
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2... 25 9.2
>SPAC1093.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 27.9 bits (59), Expect = 0.99
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 312 PFVPRAVEPKYLSRTSLRDENGKPKIADEELQAVT 416
PF+PR +P+ + +TS +EN D++ + V+
Sbjct: 664 PFIPRRNQPRDMFKTSAEEENEDEDEDDDKFRRVS 698
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 27.5 bits (58), Expect = 1.3
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Frame = +3
Query: 249 ITFNFAVREWVNEYFGT--NIEMPFVPRAVEPKYLSRTSLRDENGKPKIADEELQAVTNC 422
++ +F WVN E+ + + P S S +GKP +AD +++ C
Sbjct: 116 VSVSFDCLNWVNSMIPNLPEKELQYWILELLPLQSSFLSYALRDGKPSVADSAIKSTRRC 175
Query: 423 TLTNALKQLASLVLLAEDIFSE 488
+ K++ SL L + +E
Sbjct: 176 YRSLFCKKMDSLKKLVSFLLTE 197
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 25.4 bits (53), Expect = 5.3
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2
Query: 421 QLVTACNSSSAIFGF 377
Q + ACNSSSAI+ F
Sbjct: 710 QQILACNSSSAIYSF 724
>SPBC18H10.09 |||zinc finger protein, zf-CHY
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 25.4 bits (53), Expect = 5.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 229 CVEWMWELHLISQCGNG*MNISELISRCLSCHVRSNLSI 345
C+EW HL + G I L+ +C+ CH S +SI
Sbjct: 162 CLEWK-NPHL-TNVGTLKAPILRLVIKCVRCHYGSEISI 198
>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
Byr2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 659
Score = 24.6 bits (51), Expect = 9.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 225 SQKTSGNRHFELTDILTGELSLKPLFLIRHAVQ 127
S S +RH +L D L GE++L H VQ
Sbjct: 429 SVSESKDRHAKLLDALAGEIALLQELSHEHIVQ 461
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 24.6 bits (51), Expect = 9.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 312 PFVPRAVEPKYLSRTSLRDENGKPKIADEELQAV 413
P P++V PK +RT DEN ++E +V
Sbjct: 1069 PLAPKSVSPKQAARTLDIDENYDDDEGEKETVSV 1102
>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 24.6 bits (51), Expect = 9.2
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = -2
Query: 463 STSEASCLSAFVKV----QLVTACNSSSAIFGFPFSSRKLVRDKYLGSTARG 320
+ ++A CL F + ++ A SS A++G ++KL +DK + T G
Sbjct: 620 AVTDAQCLEGFRALCHLEGIIPALESSHAVYGGMELAKKLPKDKDIVITISG 671
>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 24.6 bits (51), Expect = 9.2
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = -3
Query: 198 FELTDILTGELSLKPLFLIRHAVQVTY*LMRKYFNSDNKF-RKVSKKLLVYEIPPLS*QH 22
++ +I+ +L LFL+ + V + R D+ + VSK+ + PPL H
Sbjct: 16 YKFNNIVKFDLYNVLLFLL-FLLPVLFVFARSMIEFDDTYPESVSKRARPSQKPPLRSTH 74
Query: 21 APHSLL 4
PH L+
Sbjct: 75 LPHLLI 80
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 24.6 bits (51), Expect = 9.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 86 ISSEKFQRNFLFTKSRHYH 30
ISSEK R+FL S HY+
Sbjct: 678 ISSEKIYRSFLSRISEHYN 696
>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 24.6 bits (51), Expect = 9.2
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +3
Query: 240 DVGITFNFAVREWVNEYFGTNIE 308
++G+ +N +R W+ Y G N E
Sbjct: 33 ELGVKWNSDIRSWMTSYVGFNGE 55
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,078,701
Number of Sequences: 5004
Number of extensions: 42369
Number of successful extensions: 128
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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