Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30023
         (527 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0935 + 21670372-21671396,21672057-21672987                       31   0.76 
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622...    29   1.7  
01_06_0847 + 32411521-32411619,32411737-32411851,32412292-324123...    28   4.0  
03_06_0354 - 33333634-33333840,33334106-33334213,33335384-333355...    28   5.3  
08_02_0017 - 11264038-11264260,11264376-11264653                       27   9.3  
08_01_0217 + 1738321-1739104,1739683-1739915,1740002-1740292,174...    27   9.3  

>10_08_0935 + 21670372-21671396,21672057-21672987
          Length = 651

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +3

Query: 312 PFVPRAVEPKYLSRTSLRDENGKPKIADEELQAV-TNCTLTNALKQLA 452
           P VPRAVEP  ++         KP   D    A+ +NC  TN+ K++A
Sbjct: 587 PGVPRAVEPVAVAAAVPATVMSKPPPVDTVEMAIHSNCNSTNSSKRMA 634


>03_05_1065 +
           30061588-30061883,30061995-30062056,30062196-30062276,
           30062391-30062464,30062547-30062629,30063044-30063147,
           30063526-30063665,30063736-30063783,30063939-30063991,
           30064178-30064262,30064346-30064412,30064496-30064606,
           30065262-30065283,30066244-30071110,30071186-30071374,
           30071463-30071577,30072329-30073388,30074247-30074694,
           30074966-30075019,30075105-30076898,30076989-30077949,
           30078271-30078384,30078459-30078613,30078934-30079026,
           30079341-30079613,30093423-30093975,30094465-30094540,
           30094619-30094718
          Length = 4025

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 243 HPFNTLSQKTSGNRHFELTDILTGELSLKPLF 148
           HP+  L+  +SG+R F + D +  ELSL  +F
Sbjct: 373 HPYLPLATTSSGHRRFGMEDEIEEELSLAGIF 404


>01_06_0847 + 32411521-32411619,32411737-32411851,32412292-32412375,
            32412430-32413478,32414690-32416371,32416477-32416586,
            32417634-32418430,32418839-32418951,32419147-32419194,
            32419425-32419652,32419732-32419829,32419967-32420019
          Length = 1491

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 247  ELHLISQCGNG*MNISELISRCLSCHVRSNLSICHGQVC 363
            ELHL SQ  N   N +++I+RC      S L +  G+ C
Sbjct: 1236 ELHLCSQQWNSCSNTNKIIARCSPHLGSSGLEVNCGEPC 1274


>03_06_0354 -
           33333634-33333840,33334106-33334213,33335384-33335557,
           33335637-33335765,33335858-33336145,33336257-33336489,
           33336607-33337435
          Length = 655

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = -1

Query: 323 WHERHLDISSEIFIHPFPHCEIKCNSHIHSTHYHKKRQV 207
           W ER  +     ++H    C+  C    ++ HY   RQ+
Sbjct: 599 WVERFNNTRHVQYVHSIKFCQFGCIDDYYTAHYQSPRQM 637


>08_02_0017 - 11264038-11264260,11264376-11264653
          Length = 166

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 155 GFSESSPVRMSVNSKWRLPDVFCDNVLNG 241
           G+ +S P R  V  KWR   V C+N  +G
Sbjct: 85  GWVDSYPGRKRVRRKWRRAGVGCENQSDG 113


>08_01_0217 +
           1738321-1739104,1739683-1739915,1740002-1740292,
           1740524-1740616,1740912-1741040,1741522-1741695,
           1741883-1741990,1742073-1742279
          Length = 672

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = -1

Query: 323 WHERHLDISSEIFIHPFPHCEIKCNSHIHSTHYHKKRQV 207
           W E+    S   + H +  C+  C  + ++ HY   RQ+
Sbjct: 616 WVEKFNSTSPVKYSHSWKFCQYGCLENYYTAHYQSPRQM 654


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,090,827
Number of Sequences: 37544
Number of extensions: 258306
Number of successful extensions: 604
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)