Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30023
         (527 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56047| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   4e-04
SB_3667| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.59 
SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_33083| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_531| Best HMM Match : wnt (HMM E-Value=0)                           27   7.2  
SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_47298| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_37941| Best HMM Match : Peptidase_M14 (HMM E-Value=0)               27   9.6  

>SB_56047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 440

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 27/68 (39%), Positives = 39/68 (57%)
 Frame = +3

Query: 309 MPFVPRAVEPKYLSRTSLRDENGKPKIADEELQAVTNCTLTNALKQLASLVLLAEDIFSE 488
           MP + R +EP  LSR  + D      +A+ EL+AV+  TL   ++QL+SL   AED+F E
Sbjct: 1   MPLIKRLIEPTDLSRGKIGD-----NLAN-ELEAVSVNTLCGIMRQLSSLSKHAEDVFGE 54

Query: 489 LTEQLQEI 512
           L  +   I
Sbjct: 55  LYMEANNI 62


>SB_3667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = +3

Query: 249 ITFNFAVREWVNEY----FGTNIEMPFVPRAVEPKYLSRTSLRDENGKPKI 389
           IT  F  R W N++    +    E  FVP  V  KY+ RT     N KP++
Sbjct: 126 ITKGFVCRNWANDFLPEQYKLKDEEEFVPFMVR-KYVDRTKYNVNNNKPQV 175


>SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1383

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +3

Query: 294  GTNIEMPFVPRAVEPKYLSRTSLRDENGKPKIADEELQAVTNCTLTNALKQLASLV 461
            G+ I+    P+  + KYL +  LRDE  +   +D E   +T+    + ++  +S+V
Sbjct: 898  GSAIDYSHAPKDADEKYLKKNVLRDEPVRDTDSDTEGHDITSSVGPSPVQYQSSVV 953


>SB_33083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 413

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 107 ENILTQIISSEKFQRNFLFTKSRHYHS 27
           + I+T I   +KF + +L ++S +YHS
Sbjct: 256 KGIITSIKLKDKFYKKYLVSRSEYYHS 282


>SB_531| Best HMM Match : wnt (HMM E-Value=0)
          Length = 646

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 170 SPVRMSVNSKWRLPDVF 220
           SP R++ + +WRLPDVF
Sbjct: 142 SPSRVNYSLQWRLPDVF 158


>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2014

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 299  SSEIFIHPFPHCEIKCNSHIHSTHYHKKRQVTATLN 192
            S E F+ P P+C +K        H+   R+V+ TLN
Sbjct: 1914 SDETFLRP-PNCSVKMRILPEMLHWQWTRKVSRTLN 1948


>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1671

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +2

Query: 140  LIKNKGFSESSPVRMSVNSKWRLPDVFCDNVLN 238
            +I  + F E  PVRM   S WR   +FC  VLN
Sbjct: 916  IIARQEFPEI-PVRMGFPSTWRWALLFCGLVLN 947


>SB_47298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 324 RAVEPKYLSRTSLRDENGKPKIADEE 401
           RA EPKY SRT + D+    +  D+E
Sbjct: 350 RANEPKYSSRTQMTDDESYIQTDDDE 375


>SB_37941| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
          Length = 1328

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
 Frame = +2

Query: 152 KGFSESSPVRMSVNSKWRLPDV----FCDNVLNGCGNY 253
           + +SE+ P     NS W+ PD     F D + NG   Y
Sbjct: 269 RAYSEAHPTMHLANSPWKCPDKQREHFIDGITNGARWY 306


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,434,157
Number of Sequences: 59808
Number of extensions: 312033
Number of successful extensions: 652
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)