BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30023 (527 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81106-2|CAB03220.2| 468|Caenorhabditis elegans Hypothetical pr... 41 6e-04 L23649-3|AAA27909.2| 601|Caenorhabditis elegans Tyrosinase prot... 28 3.6 U40947-1|AAC48068.1| 610|Caenorhabditis elegans Hypothetical pr... 28 4.8 >Z81106-2|CAB03220.2| 468|Caenorhabditis elegans Hypothetical protein R06C1.3 protein. Length = 468 Score = 40.7 bits (91), Expect = 6e-04 Identities = 25/61 (40%), Positives = 34/61 (55%) Frame = +3 Query: 309 MPFVPRAVEPKYLSRTSLRDENGKPKIADEELQAVTNCTLTNALKQLASLVLLAEDIFSE 488 MP RAV P LSR ++ I +ELQ N T+ N ++QL+SL AE+IF E Sbjct: 1 MPLTKRAVSPVNLSRGTI-----PSTIHRDELQCTANGTIANLVRQLSSLSKHAENIFGE 55 Query: 489 L 491 + Sbjct: 56 I 56 >L23649-3|AAA27909.2| 601|Caenorhabditis elegans Tyrosinase protein 1 protein. Length = 601 Score = 28.3 bits (60), Expect = 3.6 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +2 Query: 365 RRKWKAKNCR*RITSCN*LHFDECAQTARLAR 460 RR+W A+NC+ CN CA AR +R Sbjct: 542 RRQWMAENCQATCGWCNMNEAQLCASVARQSR 573 >U40947-1|AAC48068.1| 610|Caenorhabditis elegans Hypothetical protein R03E9.2 protein. Length = 610 Score = 27.9 bits (59), Expect = 4.8 Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 1/96 (1%) Frame = -2 Query: 382 GFPFSSRKLVRDKYLGSTARG-TKGISILVPKYSFTHSRTAKLNVIPTSIQHIITKNVR* 206 G FSS K + D + S A G++ILVPK A L ++ + ++ Sbjct: 179 GTAFSSEKDI-DTQIKSIANSWLDGVNILVPKEFLERLPKAYLEIMEYAYAYVANSLNFI 237 Query: 205 PPL*INRHPDR*TFTKTLVFDKTCSSGYVLVDEKIF 98 P + + T +T+ F ++ + G+ D+++F Sbjct: 238 PSAKLIGQYENFTVDQTMFFIQSRNEGFTSFDDQVF 273 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,544,519 Number of Sequences: 27780 Number of extensions: 239434 Number of successful extensions: 588 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 567 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 588 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1038911524 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -