Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30023
         (527 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49840.1 68416.m05449 proline-rich family protein contains pr...    29   1.9  
At5g25920.1 68418.m03079 hypothetical protein                          27   5.9  
At5g42800.1 68418.m05213 dihydroflavonol 4-reductase (dihydrokae...    27   7.8  
At5g12100.1 68418.m01421 pentatricopeptide (PPR) repeat-containi...    27   7.8  
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein...    27   7.8  
At4g10370.1 68417.m01702 DC1 domain-containing protein contains ...    27   7.8  

>At3g49840.1 68416.m05449 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 606

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +3

Query: 294 GTNIEMPFVPRAVEPKYLSRTSLRDENGKPKIADEELQAVTNCTLTNALKQLAS 455
           G+N ++  VP + E      +  +   G+ K+  EELQ  T  +  NALK+L S
Sbjct: 379 GSNKKLRTVPLS-ESDIFPSSFHKTPEGRRKLTKEELQKFTKESTENALKELVS 431


>At5g25920.1 68418.m03079 hypothetical protein
          Length = 510

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 276 WVNEYFGTNIEMPFVPRAVEPKYLSRT 356
           W++ YFG N E   +PR +E + L  T
Sbjct: 112 WIDHYFGENKEPKLLPRMLEIETLEIT 138


>At5g42800.1 68418.m05213 dihydroflavonol 4-reductase
           (dihydrokaempferol 4-reductase) (DFR) nearly identical
           to GI:166686
          Length = 382

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 15/64 (23%), Positives = 28/64 (43%)
 Frame = +3

Query: 240 DVGITFNFAVREWVNEYFGTNIEMPFVPRAVEPKYLSRTSLRDENGKPKIADEELQAVTN 419
           D+G  F +++ E   E   T  +  F+P ++  + +S    ++EN   K  D     +  
Sbjct: 299 DMGFNFKYSLEEMFIESIETCRQKGFLPVSLSYQSISEIKTKNENIDVKTGDGLTDGMKP 358

Query: 420 CTLT 431
           C  T
Sbjct: 359 CNKT 362


>At5g12100.1 68418.m01421 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 816

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -3

Query: 195 ELTDILTGELSLKPLFLIRHAVQVTY*L---MRKYFN 94
           ELT+ L GE+SLKP  L+ + V   Y +   M K FN
Sbjct: 650 ELTERLFGEMSLKPDLLVYNGVLHCYAVHGDMEKAFN 686


>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
           contains PF01422: NF-X1 type zinc finger
          Length = 912

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +1

Query: 259 ISQCGNG*MNISELISRCLSCHVRSNLSICHGQVC 363
           + +CG+   +  ++  R L C++ +   ICH   C
Sbjct: 230 VRRCGHKQFSCGDVCERVLDCNIHNCREICHDGEC 264


>At4g10370.1 68417.m01702 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 687

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -1

Query: 320 HERHLDISSEIFIHPFPHCEIKCNSHIHSTHYH 222
           H  HL  S  ++ HP P   I C + +    YH
Sbjct: 167 HPTHLFHSLRLYYHPAPEFCICCKTEVFMIFYH 199


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,730,051
Number of Sequences: 28952
Number of extensions: 216755
Number of successful extensions: 601
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)