Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30019
         (523 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    26   3.0  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   3.9  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    25   6.8  

>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
            Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 311  SGSRKQDIAS*APCGRYLYHMPH 379
            +GSR       +PCGR+L  MPH
Sbjct: 1262 NGSRDAIAGVRSPCGRFLAMMPH 1284


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +2

Query: 5    LQTYYEEISCVHLVCLFRVAFVSARRHFYRYLVISFCEQFLFRRRYLHLTFH 160
            L TY+ ++SC     +   A  S R+   ++L I     F F++ +L    H
Sbjct: 1219 LGTYFTQVSCHENSIIASFALDSLRQFSMQFLEIEELSHFKFQKDFLQPFSH 1270


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 193 QCEDDTTVRGSVKREVQIPAPEQ 125
           Q +DDT  RGS  R++++P   Q
Sbjct: 62  QVQDDTGARGSGARDLKVPKQMQ 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,068,501
Number of Sequences: 5004
Number of extensions: 39665
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)