Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30019
         (523 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0374 + 3301301-3301521,3301723-3301852,3301895-3301903,330...    29   2.3  
10_08_0741 + 20235463-20235497,20237624-20237753,20238748-202389...    27   6.9  
07_03_0450 + 18320916-18321147,18321526-18321551,18321978-18322148     27   6.9  

>08_01_0374 +
           3301301-3301521,3301723-3301852,3301895-3301903,
           3302349-3302486,3302616-3302948,3303280-3303463,
           3303647-3303819
          Length = 395

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 266 DYHFSLRNNTPLRENHCSY 210
           D H  LR+N PL ++HC Y
Sbjct: 149 DLHHLLRSNQPLTDDHCQY 167


>10_08_0741 +
           20235463-20235497,20237624-20237753,20238748-20238915,
           20239097-20239429,20239647-20239830,20239904-20240076
          Length = 340

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 266 DYHFSLRNNTPLRENHCSY 210
           D H  +R+N PL ++HC Y
Sbjct: 94  DLHQIIRSNQPLTDDHCQY 112


>07_03_0450 + 18320916-18321147,18321526-18321551,18321978-18322148
          Length = 142

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 436 YQKVLGS*YSIVGFFQLFTVRHMVKVATAWCLAGNILFTRTGMSK 302
           Y+   G  +S V  +    VRH+      W L G  ++TR  M+K
Sbjct: 80  YRGPTGKFFSDVDSYTFLDVRHLDPATARWPLFGVNIYTRREMAK 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,740,032
Number of Sequences: 37544
Number of extensions: 234338
Number of successful extensions: 413
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)