Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30019
         (523 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51990| Best HMM Match : Guanylate_cyc (HMM E-Value=0)               30   1.3  
SB_22788| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_31201| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_9755| Best HMM Match : Sushi (HMM E-Value=0)                        27   7.1  
SB_44957| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_5581| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  

>SB_51990| Best HMM Match : Guanylate_cyc (HMM E-Value=0)
          Length = 1055

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 23/69 (33%), Positives = 31/69 (44%)
 Frame = +3

Query: 21  KK*VAFTSSACLEWLS*AHAATFTVT*SFHFVNSSCSGAGICTSRFTDPLTVVSSSHCYV 200
           KK  A+ S     WL  A  AT+T    F    S  +   +CT       T++ S   Y+
Sbjct: 112 KKCAAYISLFTSLWLITAELATYTFLEEF----SITARFSVCTCFILVIYTMLHSLRLYI 167

Query: 201 CVFIRTVVF 227
           C+FI TV F
Sbjct: 168 CIFI-TVAF 175


>SB_22788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 350 CGRYLYHMPHSK*LKKADNTVSRSQYFLILHKNVS 454
           CGR L ++PH   ++  DN +S  Q + +L KN +
Sbjct: 36  CGRRLANLPHKSQIRSEDN-LSFDQNWFLLIKNTN 69


>SB_31201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/65 (21%), Positives = 30/65 (46%)
 Frame = +3

Query: 9   RRTMKK*VAFTSSACLEWLS*AHAATFTVT*SFHFVNSSCSGAGICTSRFTDPLTVVSSS 188
           R  ++  +  +S+A + W+   +A    +  S   +  + S    C+    DP+T +S +
Sbjct: 137 RNAVRLALILSSNALIAWILSRNALRLALILSRKALRLALSSVTQCSYTRLDPVTQISQT 196

Query: 189 HCYVC 203
             Y+C
Sbjct: 197 RLYIC 201


>SB_9755| Best HMM Match : Sushi (HMM E-Value=0)
          Length = 1351

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 235 R*GKTTVLINTQT*QCEDDTTVRGSVKREVQI 140
           R G  T   NT T  C++   +RGSV R  Q+
Sbjct: 468 RVGSLTFYPNTMTFACDEGFLIRGSVTRRCQL 499


>SB_44957| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1336

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 70  ERTPPLLPLLSHFIL*TVLVQAPVSAPHVSQILSLLYHPH 189
           E T P    L H +   ++V A + A  V  IL +LYH H
Sbjct: 286 ENTSPATLGLQHMLGVFIMVAAGIGAGIVIIILEILYHKH 325


>SB_5581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 49

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 123 SCSGA-GICTSRFTDPLTVVSSSHCYVCVFIRTVVF 227
           +C GA G+CT     P+T+V S   +V ++ R+  F
Sbjct: 5   ACEGANGVCTCSAV-PVTIVISKRTFVNIYARSTKF 39


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,224,862
Number of Sequences: 59808
Number of extensions: 286309
Number of successful extensions: 515
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)