BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30019 (523 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z49207-8|CAJ85773.1| 455|Caenorhabditis elegans Hypothetical pr... 28 3.5 Z49207-7|CAA89072.1| 512|Caenorhabditis elegans Hypothetical pr... 28 3.5 U53155-10|AAC48271.1| 346|Caenorhabditis elegans Seven tm recep... 28 3.5 U21308-6|AAN60508.1| 284|Caenorhabditis elegans Hypothetical pr... 28 3.5 Z72505-3|CAA96610.1| 340|Caenorhabditis elegans Hypothetical pr... 27 6.2 U40423-4|AAA81453.2| 243|Caenorhabditis elegans Hypothetical pr... 27 8.1 >Z49207-8|CAJ85773.1| 455|Caenorhabditis elegans Hypothetical protein R07E3.5b protein. Length = 455 Score = 28.3 bits (60), Expect = 3.5 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 2/59 (3%) Frame = +3 Query: 36 FTSSACLEWLS*AHAATFTVT*SFHFVNSSCSGAGICTSRFTDPL--TVVSSSHCYVCV 206 F + C+ ++ F+ FH + + GIC + T P+ V+S +CY + Sbjct: 147 FLNRRCMLMCMRIYSRAFSSVIRFHDKENRANKGGICVANHTSPIDVMVLSCDNCYAMI 205 >Z49207-7|CAA89072.1| 512|Caenorhabditis elegans Hypothetical protein R07E3.5a protein. Length = 512 Score = 28.3 bits (60), Expect = 3.5 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 2/59 (3%) Frame = +3 Query: 36 FTSSACLEWLS*AHAATFTVT*SFHFVNSSCSGAGICTSRFTDPL--TVVSSSHCYVCV 206 F + C+ ++ F+ FH + + GIC + T P+ V+S +CY + Sbjct: 204 FLNRRCMLMCMRIYSRAFSSVIRFHDKENRANKGGICVANHTSPIDVMVLSCDNCYAMI 262 >U53155-10|AAC48271.1| 346|Caenorhabditis elegans Seven tm receptor protein 139 protein. Length = 346 Score = 28.3 bits (60), Expect = 3.5 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 6/53 (11%) Frame = +2 Query: 17 YEEISCVHLVCLFRVAF-----VSARRHFYRYLVISFCE-QFLFRRRYLHLTF 157 YE+++ ++CLF A+ + A + FYRY+V+ C QFL + L F Sbjct: 81 YEDLAGTFIICLFCAAYSLMTALLATQFFYRYIVV--CRPQFLHHIKGYKLCF 131 >U21308-6|AAN60508.1| 284|Caenorhabditis elegans Hypothetical protein ZK1290.13 protein. Length = 284 Score = 28.3 bits (60), Expect = 3.5 Identities = 11/23 (47%), Positives = 17/23 (73%) Frame = +2 Query: 32 CVHLVCLFRVAFVSARRHFYRYL 100 CV L+CL +AF+ ARR +++ L Sbjct: 166 CVILICLKMLAFIVARRTYFQVL 188 >Z72505-3|CAA96610.1| 340|Caenorhabditis elegans Hypothetical protein C50C10.4 protein. Length = 340 Score = 27.5 bits (58), Expect = 6.2 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%) Frame = +2 Query: 17 YEEISCVHLVCLFRVAFVSARRHFYRY---LVISFCEQFLF 130 Y + C ++CL R+ + + RH RY ++ F FLF Sbjct: 124 YGVLICPFMICLMRLTIMMSPRHHERYCQLIMYRFAIPFLF 164 >U40423-4|AAA81453.2| 243|Caenorhabditis elegans Hypothetical protein C24H10.1 protein. Length = 243 Score = 27.1 bits (57), Expect = 8.1 Identities = 13/49 (26%), Positives = 17/49 (34%) Frame = -3 Query: 350 MVPSWQYLVYXXXXXXXXXXXXXVCFKPDYHFSLRNNTPLRENHCSYKY 204 M PSWQ + C +P H N HC+YK+ Sbjct: 33 MSPSWQVVDIREFRATHHHGLWLDCTRPQLHLVKSQNKDDLPLHCTYKF 81 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,553,686 Number of Sequences: 27780 Number of extensions: 226103 Number of successful extensions: 412 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 406 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 412 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1017709248 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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