Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30013
(509 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0413 - 3107668-3107796,3107879-3107971,3108082-3108253,310... 99 2e-21
06_02_0283 + 13726047-13726090,13726160-13726266,13726515-137266... 82 2e-16
05_01_0195 - 1409820-1409966,1410304-1410360,1410774-1410828,141... 80 9e-16
05_01_0464 - 3670397-3670525,3671152-3671244,3671366-3671537,367... 75 3e-14
06_01_0023 + 227014-227166,227893-228001,228096-228157,228284-22... 46 2e-05
11_06_0340 - 22500411-22500566,22500660-22500783,22500914-225010... 44 7e-05
07_03_1669 + 28499143-28499409,28499915-28500055,28500528-285006... 41 5e-04
06_02_0320 - 14347195-14347443,14347573-14347674,14347747-143478... 39 0.002
08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-24... 31 0.54
06_02_0285 + 13789900-13790071,13790407-13790525,13790642-137907... 31 0.71
06_01_0387 - 2770387-2770514,2770963-2771063,2771152-2771255,277... 30 0.94
08_02_0358 + 16176373-16176534,16176628-16176739,16176967-161771... 27 6.6
02_04_0625 - 24547435-24547569,24547674-24547742,24547871-245479... 27 6.6
11_06_0718 - 26592786-26593856,26597401-26597451,26597977-265984... 27 8.8
06_03_1056 + 27239176-27242361 27 8.8
02_01_0302 - 2021221-2023305 27 8.8
>01_01_0413 -
3107668-3107796,3107879-3107971,3108082-3108253,
3108341-3108417,3108514-3108673,3108766-3108875,
3109384-3109443,3109545-3109618,3109748-3109871,
3110795-3110872,3111169-3111275,3112572-3112673,
3112800-3112815
Length = 433
Score = 98.7 bits (235), Expect = 2e-21
Identities = 53/127 (41%), Positives = 77/127 (60%), Gaps = 1/127 (0%)
Frame = +2
Query: 2 GCAGVSYVTYGLITRELDGVDSSYRSAMSVQSSLAMGSIYMYGTEDQKQKYLPRMATGEL 181
GC G+S + E+ VD+S + + V SSLAM +I + G+E QKQKYLP +A
Sbjct: 104 GCPGLSITASAITMAEIARVDASCSTFILVHSSLAMVTIALCGSEVQKQKYLPSLAQLTA 163
Query: 182 IGCFGLTEPNFGSDAGGLVTRAKHDAKNKCYVLSGSKTWITNAPIADIIIVWAKD-DAGK 358
+GC+ LTEPN GSDA L+T A + + G K WI N+ AD+++V A++ + +
Sbjct: 164 VGCWALTEPNHGSDASSLITTATKVPGG--WHIDGQKRWIGNSTFADVLVVLARNANTKQ 221
Query: 359 VRGFIVR 379
+ GFIVR
Sbjct: 222 LNGFIVR 228
>06_02_0283 +
13726047-13726090,13726160-13726266,13726515-13726621,
13726735-13726812,13734948-13735071,13735585-13735658,
13735742-13735801,13737561-13737670,13737806-13737965,
13738218-13738360,13738461-13738605,13738727-13738819,
13740070-13740186
Length = 453
Score = 82.2 bits (194), Expect = 2e-16
Identities = 49/126 (38%), Positives = 69/126 (54%), Gaps = 1/126 (0%)
Frame = +2
Query: 2 GCAGVSYVTYGLITRELDGVDSSYRSAMSVQSSLAMGSIYMYGTEDQKQKYLPRMATGEL 181
GC G+S + E+ VD+S S VQS LAM SI G+E QK+KYL ++ +
Sbjct: 115 GCPGLSGPACAMCFLEIARVDASIASFCLVQSCLAMVSIAQLGSEAQKEKYLRPLSKMQK 174
Query: 182 IGCFGLTEPNFGSDAGGLVTRAKHDAKNKCYVLSGSKTWITNAPIADIIIVWA-KDDAGK 358
+ + L+EPN GSDA L T A+ ++L+G K W N+ ADI +V A +
Sbjct: 175 VCVYALSEPNHGSDASSLNTTARKVPGG--WILNGQKRWPANSSFADIFVVLACNTSTNQ 232
Query: 359 VRGFIV 376
+ GFIV
Sbjct: 233 INGFIV 238
Score = 30.3 bits (65), Expect = 0.94
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 399 GLDTPKINGKFXLRAXXTGMILLDEVXIPEENLLP 503
GL KI+ K LR ILL++V +P+++ LP
Sbjct: 244 GLKISKIDNKMSLRVVQNCDILLEDVFVPDDDRLP 278
>05_01_0195 -
1409820-1409966,1410304-1410360,1410774-1410828,
1410902-1411002,1411051-1411205,1411395-1411459,
1411545-1411595,1411817-1411893,1412153-1412262,
1412355-1412403,1412528-1412572,1412689-1412813,
1413087-1413228,1413336-1413446
Length = 429
Score = 80.2 bits (189), Expect = 9e-16
Identities = 46/151 (30%), Positives = 78/151 (51%), Gaps = 4/151 (2%)
Frame = +2
Query: 2 GCAGVSYVTYGLITRELDGVDSSYRSAMSVQSSLAMGSIYMYGTEDQKQKYLPRMATGEL 181
G G+ Y+ + + E+ S + S+L + + +G+ QK KYLP++ +GE
Sbjct: 88 GGMGLGYMYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKLKYLPKLISGEH 147
Query: 182 IGCFGLTEPNFGSDAGGLVTRAKHDAKNKCYVLSGSKTWITNAPIADIIIVWAKDD--AG 355
+G ++EPN GSD + + K + + YV++G+K W TN P A ++V+AK D AG
Sbjct: 148 VGALAMSEPNSGSDVVSM--KCKAEKVDGGYVINGNKMWCTNGPSAQTLVVYAKTDIAAG 205
Query: 356 K--VRGFIVRTSRGKERFRYAQNQWEIXFAG 442
+ FI+ +G F AQ ++ G
Sbjct: 206 SKGITAFII--EKGMPGFSTAQKLDKLGMRG 234
>05_01_0464 -
3670397-3670525,3671152-3671244,3671366-3671537,
3671626-3671702,3671819-3671978,3672104-3672213,
3672321-3672380,3672492-3672629,3672922-3672999,
3673227-3673333,3674506-3674598,3674708-3674723
Length = 410
Score = 75.4 bits (177), Expect = 3e-14
Identities = 41/107 (38%), Positives = 63/107 (58%), Gaps = 1/107 (0%)
Frame = +2
Query: 62 DSSYRSAMSVQSSLAMGSIYMYGTEDQKQKYLPRMATGELIGCFGLTEPNFGSDAGGLVT 241
D+ + S++ + ++ I + G+E QKQKYLP + IGC+ LTEP++GSDA L T
Sbjct: 102 DNYFLSSLFLSFQFSV-QIALCGSEAQKQKYLPSLTQFRTIGCWALTEPDYGSDASSLRT 160
Query: 242 RAKHDAKNKCYVLSGSKTWITNAPIADIIIVWAKD-DAGKVRGFIVR 379
A + L G K WI N AD++I+ A++ D ++ GFIV+
Sbjct: 161 AATKVPGG--WHLDGQKRWIGNGTFADVLIILARNSDTNQLNGFIVK 205
>06_01_0023 +
227014-227166,227893-228001,228096-228157,228284-228493,
228609-228696,228774-228936,229037-229235,229456-229653,
229887-230018,230182-230302,230453-230563,230710-230779,
230880-231063,231137-231346
Length = 669
Score = 46.0 bits (104), Expect = 2e-05
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 12/96 (12%)
Frame = +2
Query: 128 GTEDQKQKYLPRMATGELIGCFGLTEPNFGSDAGGLVTRAKHDAKNKCYV-----LSGSK 292
GTE+Q++K+LP ++IGC+ TE GS+ GL T A D K +V L+ SK
Sbjct: 119 GTEEQQKKWLPLAYRFQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSK 178
Query: 293 TW-------ITNAPIADIIIVWAKDDAGKVRGFIVR 379
W T+A + +I KD + GFIV+
Sbjct: 179 WWPGGLGKASTHAVVYARLITEGKDYG--IHGFIVQ 212
>11_06_0340 -
22500411-22500566,22500660-22500783,22500914-22501080,
22501157-22501336,22501544-22502427,22502728-22502843,
22503745-22504217
Length = 699
Score = 44.0 bits (99), Expect = 7e-05
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Frame = +2
Query: 29 YGLITRELDGVDSSYRSAMSVQSSLAMGSIYMYGTEDQKQKYLPRMATGELIGCFGLTEP 208
Y + G D S + VQ SL GSI GT+ + ++ + + GCF +TE
Sbjct: 135 YFAVMEAAGGADISLGVKLGVQYSLWGGSIINLGTKKHRDRFFDGIDNLDYPGCFAMTEL 194
Query: 209 NFGSDAGGLVTRAKHDAKNKCYVLS-----GSKTWITNAPI 316
+ GS+ L T A D ++++ K WI NA +
Sbjct: 195 HHGSNVQALQTTATFDPVTDEFIINTPNDGAIKWWIGNAAL 235
>07_03_1669 +
28499143-28499409,28499915-28500055,28500528-28500659,
28501185-28501373,28501503-28501580,28502267-28502386,
28502701-28502818,28503012-28503280,28503428-28503622,
28503737-28503879,28504096-28504180,28504270-28504479,
28504559-28504711,28504862-28504966,28505044-28505235
Length = 798
Score = 41.1 bits (92), Expect = 5e-04
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Frame = +2
Query: 107 MGSIYMYGTEDQKQKYLPRMATGELIGCFGLTEPNF-GSDAGGLVTRAKHDAKNKCYVLS 283
M + YGT++Q++++L + G++ F +TEP SDA + + YV++
Sbjct: 502 MEVLLRYGTKEQQKQWLVPLLEGKIRSGFAMTEPQVASSDATNI--ECSISRQGDFYVIN 559
Query: 284 GSKTWITNA--PIADIIIVWAKDD 349
G+K W + A P I+++ K D
Sbjct: 560 GTKWWTSGAMDPRCQILVLMGKTD 583
>06_02_0320 -
14347195-14347443,14347573-14347674,14347747-14347851,
14347938-14348084,14348171-14348290,14348743-14348878,
14349198-14349328,14350854-14350928,14351040-14351139,
14351213-14351385,14351474-14351581,14351674-14351791,
14353477-14353970
Length = 685
Score = 39.1 bits (87), Expect = 0.002
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Frame = +2
Query: 62 DSSYRSAMSVQSSLAMGSIYMYGTEDQKQKYLPRMATGELIGCFGLTEPNFGSDAGGLVT 241
D S + V L +I GT+ K+L + GCF +TE GS+ G+ T
Sbjct: 151 DHSLAIKIGVHFFLWGSAIKFLGTKRHHDKWLSDTENYVIKGCFSMTELGHGSNVRGIET 210
Query: 242 RAKHDAKNKCYVL-----SGSKTWITNA 310
A +D K + +V+ S K WI A
Sbjct: 211 VATYDIKTREFVINTPCESAQKYWIGGA 238
>08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-246796,
246893-247240,247882-248721,248786-248832,249470-249596,
249672-249836,249973-251370,251453-251713,251802-252161
Length = 1539
Score = 31.1 bits (67), Expect = 0.54
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 222 SLPKLGSVNPKQPINSPVAMRGKY 151
SLP S++P+ +N VA+RGKY
Sbjct: 1213 SLPLFSSIHPEVAVNGKVALRGKY 1236
>06_02_0285 +
13789900-13790071,13790407-13790525,13790642-13790751,
13790887-13791046,13791407-13791483,13792299-13792470,
13792580-13792672,13793617-13793733
Length = 339
Score = 30.7 bits (66), Expect = 0.71
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 272 YVLSGSKTWITNAPIADIIIVWAKDDA-GKVRGFIV 376
++L+G K W N AD+ +V A + + ++ GFIV
Sbjct: 102 WILNGQKRWPANGSFADVFVVLACNTSNNQINGFIV 137
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 399 GLDTPKINGKFXLRAXXTGMILLDEVXIPEENLLP 503
GL KI K LR ILL++V +P+++ LP
Sbjct: 143 GLKISKIENKTSLRVVQNCDILLEDVFVPDDDRLP 177
>06_01_0387 -
2770387-2770514,2770963-2771063,2771152-2771255,
2771345-2771507,2771550-2771596,2772818-2772946
Length = 223
Score = 30.3 bits (65), Expect = 0.94
Identities = 20/76 (26%), Positives = 30/76 (39%)
Frame = +2
Query: 59 VDSSYRSAMSVQSSLAMGSIYMYGTEDQKQKYLPRMATGELIGCFGLTEPNFGSDAGGLV 238
VDS M + S+ GS+Y YG D+ +Y+ + + + + F A G
Sbjct: 120 VDSEGARLMGSRFSVGSGSLYAYGILDEGYRYVMPVEEAAELARRAIYQATFRDGASGGC 179
Query: 239 TRAKHDAKNKCYVLSG 286
H N LSG
Sbjct: 180 VSVYHVGPNGWTKLSG 195
>08_02_0358 +
16176373-16176534,16176628-16176739,16176967-16177151,
16177325-16177330
Length = 154
Score = 27.5 bits (58), Expect = 6.6
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -2
Query: 175 TCSHAW*VFLFLVFSSVHINRTHCQTTLHTHR*SIRGVNAI*FSCNET 32
T SH +FLFL +V + T+ +T++H H S+ + F+C T
Sbjct: 3 TPSHCL-IFLFLCLPAVLVRLTYLETSIHVHA-SVPRRMGLAFTCTCT 48
>02_04_0625 - 24547435-24547569,24547674-24547742,24547871-24547997,
24548086-24548209,24548714-24548832,24548953-24549044,
24549124-24549329,24549429-24549534,24549636-24549740,
24549836-24549942,24550030-24550253,24550341-24550468,
24550945-24551022,24551338-24552012,24552655-24552798,
24552985-24553064,24553958-24554029,24554124-24554343,
24554460-24554590,24555118-24555243,24555567-24555695,
24556156-24556318,24556408-24556545,24557198-24557317,
24557521-24557682,24557751-24557876,24558172-24558342,
24558435-24558590,24559061-24559408
Length = 1526
Score = 27.5 bits (58), Expect = 6.6
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Frame = +2
Query: 29 YGLITRELDGVDSSYRSAMSVQSSLAMGSIYMYGTEDQKQKYLPRMATGELIGCFGLTEP 208
YGL+ DGV ++ A + +G + K +P+ TG I F T
Sbjct: 970 YGLVLELSDGVRGMHKFAENGHKDFEVGEELLVKCSSFNAKGIPKYRTGRKIVAFSATRS 1029
Query: 209 N----FGSDAGGLVTRAKHDAKNKCYVLSGSK 292
+ GS+A R + + KN+ + S S+
Sbjct: 1030 HNDEACGSEAAS-DNRQEMNQKNEPKMRSSSR 1060
>11_06_0718 -
26592786-26593856,26597401-26597451,26597977-26598423,
26599748-26599815,26599965-26600052
Length = 574
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 341 KDDAGKVRGFIVRTSRGKERFRYAQNQWE 427
K++ K GFI+ S G ++F+Y++ WE
Sbjct: 225 KEEKKKRVGFILLLSDGVDQFQYSRINWE 253
>06_03_1056 + 27239176-27242361
Length = 1061
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 194 QNNQLIHL*PCVVSISVSGLQFRTYKSNPLPNYS 93
++ LI++ C SI + G +FR + +PNYS
Sbjct: 789 KHRNLINIVTCCSSIDMEGNEFRALVFDFMPNYS 822
>02_01_0302 - 2021221-2023305
Length = 694
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = -3
Query: 258 ASCFALVTNP-PASLPKLGSVNPKQPINSPVAMRGKY 151
A C A P P P G P P++SP RG Y
Sbjct: 378 AQCQAASYTPTPGGSPGRGGQGPPAPVSSPPRRRGPY 414
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,287,406
Number of Sequences: 37544
Number of extensions: 263584
Number of successful extensions: 597
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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