Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30013
(509 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g51840.1 68416.m05685 short-chain acyl-CoA oxidase identical ... 95 3e-20
At3g45300.1 68416.m04891 isovaleryl-CoA-dehydrogenase (IVD) iden... 86 1e-17
At5g65110.1 68418.m08191 acyl-CoA oxidase (ACX2) identical to ac... 52 2e-07
At2g35690.1 68415.m04377 acyl-CoA oxidase, putative strong simil... 45 3e-05
At4g16760.1 68417.m02531 acyl-CoA oxidase (ACX1) identical to ac... 42 3e-04
At1g06290.1 68414.m00665 acyl-CoA oxidase (ACX3) identical to ac... 40 0.001
At3g06810.1 68416.m00808 acyl-CoA dehydrogenase-related low simi... 38 0.005
At1g06310.1 68414.m00667 acyl-CoA oxidase, putative strong simil... 36 0.012
At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger) fa... 29 1.4
At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger) fa... 29 1.4
At1g70440.1 68414.m08104 hypothetical protein 29 1.4
At1g74820.1 68414.m08668 cupin family protein similar to germin-... 29 2.4
At2g33580.1 68415.m04115 protein kinase family protein / peptido... 28 3.2
At2g26900.1 68415.m03227 bile acid:sodium symporter family prote... 28 3.2
At5g55910.1 68418.m06972 protein kinase, putative contains prote... 27 5.5
At5g24750.1 68418.m02921 expressed protein 27 5.5
At4g26610.1 68417.m03835 protein kinase, putative similar to pro... 27 5.5
At2g04030.2 68415.m00372 heat shock protein, putative strong sim... 27 5.5
At2g04030.1 68415.m00371 heat shock protein, putative strong sim... 27 5.5
At5g64150.1 68418.m08055 methylase family protein contains TIGRf... 27 7.3
At5g47750.1 68418.m05899 protein kinase, putative similar to pro... 27 7.3
At3g45130.1 68416.m04871 cycloartenol synthase, putative / 2,3-e... 27 7.3
>At3g51840.1 68416.m05685 short-chain acyl-CoA oxidase identical to
Short-chain acyl CoA oxidase [Arabidopsis thaliana]
GI:5478795; contains InterPro entry IPR006089: Acyl-CoA
dehydrogenase
Length = 436
Score = 94.7 bits (225), Expect = 3e-20
Identities = 50/127 (39%), Positives = 77/127 (60%), Gaps = 1/127 (0%)
Frame = +2
Query: 2 GCAGVSYVTYGLITRELDGVDSSYRSAMSVQSSLAMGSIYMYGTEDQKQKYLPRMATGEL 181
GC G+S + T E+ VD+S + + V SSL M +I + G+E QK+KYLP +A
Sbjct: 109 GCPGLSITANAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNT 168
Query: 182 IGCFGLTEPNFGSDAGGLVTRAKHDAKNKCYVLSGSKTWITNAPIADIIIVWAKD-DAGK 358
+ C+ LTEP+ GSDA GL T A + ++G K WI N+ AD++I++A++ +
Sbjct: 169 VACWALTEPDNGSDASGLGTTATKVEGG--WKINGQKRWIGNSTFADLLIIFARNTTTNQ 226
Query: 359 VRGFIVR 379
+ GFIV+
Sbjct: 227 INGFIVK 233
Score = 33.9 bits (74), Expect = 0.064
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +3
Query: 399 GLDTPKINGKFXLRAXXTGMILLDEVXIPEENLLPNV 509
GL KI K LR G ILL V +P+E+ LP V
Sbjct: 238 GLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGV 274
>At3g45300.1 68416.m04891 isovaleryl-CoA-dehydrogenase (IVD)
identical to isovaleryl-CoA-dehydrogenase precursor
[Arabidopsis thaliana] GI:5596622
Length = 409
Score = 85.8 bits (203), Expect = 1e-17
Identities = 48/151 (31%), Positives = 80/151 (52%), Gaps = 4/151 (2%)
Frame = +2
Query: 2 GCAGVSYVTYGLITRELDGVDSSYRSAMSVQSSLAMGSIYMYGTEDQKQKYLPRMATGEL 181
G G+ Y+ + + E+ S + S+L + + GT QK+KYLP++ +GE
Sbjct: 88 GGLGLGYLYHCIAMEEISRASGSVALSYGAHSNLCINQLVRNGTAAQKEKYLPKLISGEH 147
Query: 182 IGCFGLTEPNFGSDAGGLVTRAKHDAKNKCYVLSGSKTWITNAPIADIIIVWAKDD--AG 355
+G ++EPN GSD G+ + K + + Y+L+G+K W TN P A+ ++V+AK D AG
Sbjct: 148 VGALAMSEPNAGSDVVGM--KCKAEKVDGGYILNGNKMWCTNGPSAETLVVYAKTDTKAG 205
Query: 356 K--VRGFIVRTSRGKERFRYAQNQWEIXFAG 442
+ FI+ +G F AQ ++ G
Sbjct: 206 SKGITAFII--EKGMTGFSTAQKLDKLGMRG 234
>At5g65110.1 68418.m08191 acyl-CoA oxidase (ACX2) identical to
acyl-CoA oxidase [Arabidopsis thaliana] GI:3044212
Length = 692
Score = 52.0 bits (119), Expect = 2e-07
Identities = 34/101 (33%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Frame = +2
Query: 29 YGLITRELDGVDSSYRSAMSVQSSLAMGSIYMYGTEDQKQKYLPRMATGELIGCFGLTEP 208
Y I + VD S M VQ SL GS+ GT+ + KY + + GCF +TE
Sbjct: 129 YFAIMEAVGSVDMSLGIKMGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYTGCFAMTEL 188
Query: 209 NFGSDAGGLVTRAKHDAKNKCYVL-----SGSKTWITNAPI 316
+ GS+ GL T A D +V+ K WI NA +
Sbjct: 189 HHGSNVQGLQTTATFDPLKDEFVIDTPNDGAIKWWIGNAAV 229
>At2g35690.1 68415.m04377 acyl-CoA oxidase, putative strong
similarity to acyl-CoA oxidase [Arabidopsis thaliana]
GI:3044214
Length = 664
Score = 44.8 bits (101), Expect = 3e-05
Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 12/96 (12%)
Frame = +2
Query: 128 GTEDQKQKYLPRMATGELIGCFGLTEPNFGSDAGGLVTRAKHDAKNKCYVL-----SGSK 292
GTE Q+QK+L ++IGC+ TE GS+ GL T A D K +++ + SK
Sbjct: 114 GTEQQQQKWLSLATKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDQFIIHSPTQTSSK 173
Query: 293 TW-------ITNAPIADIIIVWAKDDAGKVRGFIVR 379
W T+A I +I KD V GFIV+
Sbjct: 174 WWPGGLGKVSTHAVIYARLITNGKDHG--VHGFIVQ 207
>At4g16760.1 68417.m02531 acyl-CoA oxidase (ACX1) identical to
acyl-CoA oxidase [Arabidopsis thaliana] GI:3044214
Length = 675
Score = 41.5 bits (93), Expect = 3e-04
Identities = 20/51 (39%), Positives = 30/51 (58%)
Frame = +2
Query: 128 GTEDQKQKYLPRMATGELIGCFGLTEPNFGSDAGGLVTRAKHDAKNKCYVL 280
GTE+Q++K+L ++IGC+ TE GS+ GL T A D K +V+
Sbjct: 114 GTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVI 164
>At1g06290.1 68414.m00665 acyl-CoA oxidase (ACX3) identical to
acyl-CoA oxidase ACX3 [Arabidopsis thaliana] GI:8163758,
GI:8515709
Length = 675
Score = 39.5 bits (88), Expect = 0.001
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Frame = +2
Query: 47 ELDGV-DSSYRSAMSVQSSLAMGSIYMYGTEDQKQKYLPRMATGELIGCFGLTEPNFGSD 223
E+ G+ D S + V L ++ +GT+ +K+L + GCF +TE GS+
Sbjct: 137 EVCGIYDHSVSIKVGVHFFLWGNAVKFFGTKRHHEKWLKNTEDYVVKGCFAMTELGHGSN 196
Query: 224 AGGLVTRAKHDAKNKCYVL-----SGSKTWITNA 310
G+ T +D K + +V+ S K WI A
Sbjct: 197 VRGIETVTTYDPKTEEFVINTPCESAQKYWIGGA 230
>At3g06810.1 68416.m00808 acyl-CoA dehydrogenase-related low
similarity to acyl-CoA dehydrogenase [Acinetobacter sp.
NCIMB9871] GI:14587418; contains Pfam profiles PF01636:
Phosphotransferase enzyme family, PF00441: Acyl-CoA
dehydrogenase C-terminal domain, PF02770: Acyl-CoA
dehydrogenase middle domain
Length = 824
Score = 37.5 bits (83), Expect = 0.005
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Frame = +2
Query: 107 MGSIYMYGTEDQKQKYLPRMATGELIGCFGLTEPNF-GSDAGGLVTRAKHDAKNKCYVLS 283
M I YG ++Q ++L + G + F +TEP SDA + + + YV++
Sbjct: 527 MEVILRYGNKEQISEWLIPLLEGRIRSGFAMTEPQVASSDATNIECSIRRQGDS--YVIN 584
Query: 284 GSKTWITNA--PIADIIIVWAKDD 349
G+K W + A P ++I+ K D
Sbjct: 585 GTKWWTSGAMDPRCRVLILMGKTD 608
>At1g06310.1 68414.m00667 acyl-CoA oxidase, putative strong
similarity to acyl-CoA oxidase ACX3 GI:8163758 from
[Arabidopsis thaliana]
Length = 675
Score = 36.3 bits (80), Expect = 0.012
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Frame = +2
Query: 47 ELDGV-DSSYRSAMSVQSSLAMGSIYMYGTEDQKQKYLPRMATGELIGCFGLTEPNFGSD 223
E+ G+ D S + + V L ++ +GT+ +K+L + GCF +TE G++
Sbjct: 137 EVCGIYDYSLSAKLGVHFLLWGNAVKFFGTKRHHEKWLKDTEDYVVKGCFAMTELGHGTN 196
Query: 224 AGGLVTRAKHDAKNKCYVL-----SGSKTWITNA 310
G+ T +D + +V+ S K WI A
Sbjct: 197 VRGIETVTTYDPTTEEFVINTPCESAQKYWIGEA 230
>At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 704
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = +2
Query: 83 MSVQSSLAMGSIYMYGTEDQKQKYLPRMATGELIGCFGLTEPNFGSDAG-GLVTRAKHDA 259
+ ++S + S+ YG P ++ + FG TE FGS G + A H
Sbjct: 225 VQTENSASHASLSQYGASSSLSLATPSQSSPNVTNHFGRTEQMFGSGGGRAVAASAFHST 284
Query: 260 KN 265
+N
Sbjct: 285 RN 286
>At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 704
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = +2
Query: 83 MSVQSSLAMGSIYMYGTEDQKQKYLPRMATGELIGCFGLTEPNFGSDAG-GLVTRAKHDA 259
+ ++S + S+ YG P ++ + FG TE FGS G + A H
Sbjct: 225 VQTENSASHASLSQYGASSSLSLATPSQSSPNVTNHFGRTEQMFGSGGGRAVAASAFHST 284
Query: 260 KN 265
+N
Sbjct: 285 RN 286
>At1g70440.1 68414.m08104 hypothetical protein
Length = 305
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +2
Query: 134 EDQKQKYLPRMATGELIGCFGLTEPNFGSDAGGLVTRA--KHDAKNKCYVLSGSKTWITN 307
E + Q+ + + GE+I PNF DA L+ A +H+ C+ LSG ++ T
Sbjct: 6 EIEDQESVTNLDNGEIINPISDNAPNFSGDATILLREATFEHNLIKNCF-LSGMGSFATE 64
Query: 308 APIADI 325
I +
Sbjct: 65 TTIVTV 70
>At1g74820.1 68414.m08668 cupin family protein similar to
germin-like protein SP|P92995; contains Pfam profile
PF00190: Cupin
Length = 227
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -3
Query: 267 LFFASCFALVTNPPASLPKLGSVNPKQ 187
+F A C L TNP SLP L +NP Q
Sbjct: 16 IFLALCITLFTNPTLSLPAL-KLNPFQ 41
>At2g33580.1 68415.m04115 protein kinase family protein /
peptidoglycan-binding LysM domain-containing protein
protein kinase [Arabidopsis thaliana] GI:2852449;
contains Pfam profiles PF01476: LysM domain, PF00069:
Protein kinase domain
Length = 664
Score = 28.3 bits (60), Expect = 3.2
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 180 NSPVAMRGKYFCFWSSVPYI*IEPIAKLLCTLIADL 73
N P + R Y FWS PY + IAKLL A++
Sbjct: 53 NGPPSCRS-YLTFWSQPPYNTADSIAKLLNVSAAEI 87
>At2g26900.1 68415.m03227 bile acid:sodium symporter family protein
low similarity to SP|Q12908 Ileal sodium/bile acid
cotransporter {Homo sapiens}; contains Pfam profile
PF01758: Sodium Bile acid symporter family
Length = 409
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 212 NWVPLTQNNQLIHL*PCVVSISVSGLQFRTYKSNPL 105
+WVP T Q P +VS+S SG+ R S P+
Sbjct: 22 SWVPSTTRTQTHLDFPKLVSVSNSGISLRIQNSKPI 57
>At5g55910.1 68418.m06972 protein kinase, putative contains protein
kinase domain, Pfam:PF00069
Length = 498
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = -2
Query: 400 PFFTSARSHYKTAYFTCVV--FCP 335
PF + SH++T F+C+V FCP
Sbjct: 167 PFLPTLYSHFETEKFSCLVMEFCP 190
>At5g24750.1 68418.m02921 expressed protein
Length = 520
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = -3
Query: 192 KQPINSPVAM-RGKYFCFWSSVPY 124
KQP+++ +++ GK FCF VPY
Sbjct: 369 KQPLHAGISIFNGKLFCFSGMVPY 392
>At4g26610.1 68417.m03835 protein kinase, putative similar to
protein kinase G11A [Oryza sativa] SWISS-PROT:P47997
Length = 506
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = -2
Query: 400 PFFTSARSHYKTAYFTCVV--FCP 335
PF + SH++T F+C+V FCP
Sbjct: 181 PFLPTLYSHFETEKFSCLVMEFCP 204
>At2g04030.2 68415.m00372 heat shock protein, putative strong
similarity to heat shock protein [Arabidopsis thaliana]
GI:1906830; contains Pfam profiles PF02518: ATPase,
histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein, PF00183: Hsp90 protein
Length = 777
Score = 27.5 bits (58), Expect = 5.5
Identities = 22/106 (20%), Positives = 41/106 (38%)
Frame = +2
Query: 41 TRELDGVDSSYRSAMSVQSSLAMGSIYMYGTEDQKQKYLPRMATGELIGCFGLTEPNFGS 220
T E G Y++ +S L + S+Y + ++ + + +TEP+
Sbjct: 71 TEEGSGEKFEYQAEVSRLLDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLG 130
Query: 221 DAGGLVTRAKHDAKNKCYVLSGSKTWITNAPIADIIIVWAKDDAGK 358
D G L R K D N ++ + +T + D + A+ K
Sbjct: 131 DGGDLEIRIKPDPDNGTITITDTGIGMTKEELIDCLGTIAQSGTSK 176
>At2g04030.1 68415.m00371 heat shock protein, putative strong
similarity to heat shock protein [Arabidopsis thaliana]
GI:1906830; contains Pfam profiles PF02518: ATPase,
histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein, PF00183: Hsp90 protein
Length = 780
Score = 27.5 bits (58), Expect = 5.5
Identities = 22/106 (20%), Positives = 41/106 (38%)
Frame = +2
Query: 41 TRELDGVDSSYRSAMSVQSSLAMGSIYMYGTEDQKQKYLPRMATGELIGCFGLTEPNFGS 220
T E G Y++ +S L + S+Y + ++ + + +TEP+
Sbjct: 71 TEEGSGEKFEYQAEVSRLLDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLG 130
Query: 221 DAGGLVTRAKHDAKNKCYVLSGSKTWITNAPIADIIIVWAKDDAGK 358
D G L R K D N ++ + +T + D + A+ K
Sbjct: 131 DGGDLEIRIKPDPDNGTITITDTGIGMTKEELIDCLGTIAQSGTSK 176
>At5g64150.1 68418.m08055 methylase family protein contains TIGRfam
TIGR00536: modification methylase, HemK family
Length = 377
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = +2
Query: 50 LDGVDSSYRSAMSVQSSLAMGSIYMYGTEDQKQK--YLPRMATGELIGCF 193
+DG DS + L G +++ T +KQ + M T +L CF
Sbjct: 307 IDGTDSLFHLCHGASRMLQPGGFFVFETNGEKQSKMIVDYMMTSDLKDCF 356
>At5g47750.1 68418.m05899 protein kinase, putative similar to
protein kinase G11A [Oryza sativa] SWISS-PROT:P47997
Length = 586
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -2
Query: 421 LILGVSKPFFTSARSHYKTAYFTCVV--FCP 335
++ + PF + +H++T F+C+V FCP
Sbjct: 242 ILQSLDHPFLPTLYTHFETEKFSCLVMEFCP 272
>At3g45130.1 68416.m04871 cycloartenol synthase, putative /
2,3-epoxysqualene--cycloartenol cyclase, putative /
(S)-2,3-epoxysqualene mutase, putative 77% similar to
cycloartenol synthase [SP|P38605|gi:452446] [PMID:
7505443]; oxidosqualene cyclase LcOSC2 - Luffa
cylindrica, EMBL:AB033335
Length = 748
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 5 CAGVSYVTYGLITRELDGVDSSYRSAMS 88
C +SYV L+ ELDG D + SA S
Sbjct: 176 CTVLSYVALRLMGEELDGGDGAMESARS 203
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,944,325
Number of Sequences: 28952
Number of extensions: 221608
Number of successful extensions: 541
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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