Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30007
         (626 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF107840-1|AAD53401.1|  468|Homo sapiens nuclear pore-associated...    74   5e-13
Z82243-1|CAI17926.1|  468|Homo sapiens nucleoporin 50kDa protein.      73   1e-12
CR456533-1|CAG30419.1|  468|Homo sapiens NUP50 protein.                73   1e-12
BC070133-1|AAH70133.1|  468|Homo sapiens nucleoporin 50kDa protein.    73   1e-12
BC028125-1|AAH28125.1|  440|Homo sapiens nucleoporin 50kDa protein.    73   1e-12
BC016055-1|AAH16055.1|  440|Homo sapiens NUP50 protein protein.        73   1e-12
AL008718-1|CAI17944.1|  468|Homo sapiens nucleoporin 50kDa protein.    73   1e-12
BC088365-1|AAH88365.2|  435|Homo sapiens PTD016 protein protein.       30   5.8  
AK098649-1|BAC05364.1|  252|Homo sapiens protein ( Homo sapiens ...    30   5.8  

>AF107840-1|AAD53401.1|  468|Homo sapiens nuclear pore-associated
           protein protein.
          Length = 468

 Score = 73.7 bits (173), Expect = 5e-13
 Identities = 47/130 (36%), Positives = 66/130 (50%)
 Frame = +2

Query: 47  LNESLSDWIKKHVDETPLCILTPIFRDYEAYLKEIQEEYHGPDGDCSEIETKKNVNSETK 226
           LN S+ DWI KHV+  PLC LTPIF+DYE YL  I E+ HG  G  SE E+ K V +ET+
Sbjct: 163 LNCSVRDWIVKHVNTNPLCDLTPIFKDYEKYLANI-EQQHGNSGRNSESESNK-VAAETQ 220

Query: 227 NPVEKSKNGIFSESSRDLTVSGSSIFKLDPSKPFSTTPLSSSCNMLGDKPKGFSFGINTA 406
           +P       +  ESS      G+        K    +   +  + LG     F+FG    
Sbjct: 221 SPSLFGSTKLQQESS--FLFHGNKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVD 278

Query: 407 TSTINSIPAI 436
           +S + S+ ++
Sbjct: 279 SSVLGSLSSV 288


>Z82243-1|CAI17926.1|  468|Homo sapiens nucleoporin 50kDa protein.
          Length = 468

 Score = 72.5 bits (170), Expect = 1e-12
 Identities = 46/130 (35%), Positives = 66/130 (50%)
 Frame = +2

Query: 47  LNESLSDWIKKHVDETPLCILTPIFRDYEAYLKEIQEEYHGPDGDCSEIETKKNVNSETK 226
           LN S+ DWI KHV+  PLC LTPIF+DYE YL  I E+ HG  G  SE E+ K V +ET+
Sbjct: 163 LNCSVRDWIVKHVNTNPLCDLTPIFKDYEKYLANI-EQQHGNSGRNSESESNK-VAAETQ 220

Query: 227 NPVEKSKNGIFSESSRDLTVSGSSIFKLDPSKPFSTTPLSSSCNMLGDKPKGFSFGINTA 406
           +P       +  ES+      G+        K    +   +  + LG     F+FG    
Sbjct: 221 SPSLFGSTKLQQEST--FLFHGNKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVD 278

Query: 407 TSTINSIPAI 436
           +S + S+ ++
Sbjct: 279 SSVLGSLSSV 288


>CR456533-1|CAG30419.1|  468|Homo sapiens NUP50 protein.
          Length = 468

 Score = 72.5 bits (170), Expect = 1e-12
 Identities = 46/130 (35%), Positives = 66/130 (50%)
 Frame = +2

Query: 47  LNESLSDWIKKHVDETPLCILTPIFRDYEAYLKEIQEEYHGPDGDCSEIETKKNVNSETK 226
           LN S+ DWI KHV+  PLC LTPIF+DYE YL  I E+ HG  G  SE E+ K V +ET+
Sbjct: 163 LNCSVRDWIVKHVNTNPLCDLTPIFKDYEKYLANI-EQQHGNSGRNSESESNK-VAAETQ 220

Query: 227 NPVEKSKNGIFSESSRDLTVSGSSIFKLDPSKPFSTTPLSSSCNMLGDKPKGFSFGINTA 406
           +P       +  ES+      G+        K    +   +  + LG     F+FG    
Sbjct: 221 SPSLFGSTKLQQEST--FLFHGNKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVD 278

Query: 407 TSTINSIPAI 436
           +S + S+ ++
Sbjct: 279 SSVLGSLSSV 288


>BC070133-1|AAH70133.1|  468|Homo sapiens nucleoporin 50kDa protein.
          Length = 468

 Score = 72.5 bits (170), Expect = 1e-12
 Identities = 46/130 (35%), Positives = 66/130 (50%)
 Frame = +2

Query: 47  LNESLSDWIKKHVDETPLCILTPIFRDYEAYLKEIQEEYHGPDGDCSEIETKKNVNSETK 226
           LN S+ DWI KHV+  PLC LTPIF+DYE YL  I E+ HG  G  SE E+ K V +ET+
Sbjct: 163 LNCSVRDWIVKHVNTNPLCDLTPIFKDYEKYLANI-EQQHGNSGRNSESESNK-VAAETQ 220

Query: 227 NPVEKSKNGIFSESSRDLTVSGSSIFKLDPSKPFSTTPLSSSCNMLGDKPKGFSFGINTA 406
           +P       +  ES+      G+        K    +   +  + LG     F+FG    
Sbjct: 221 SPSLFGSTKLQQEST--FLFHGNKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVD 278

Query: 407 TSTINSIPAI 436
           +S + S+ ++
Sbjct: 279 SSVLGSLSSV 288


>BC028125-1|AAH28125.1|  440|Homo sapiens nucleoporin 50kDa protein.
          Length = 440

 Score = 72.5 bits (170), Expect = 1e-12
 Identities = 46/130 (35%), Positives = 66/130 (50%)
 Frame = +2

Query: 47  LNESLSDWIKKHVDETPLCILTPIFRDYEAYLKEIQEEYHGPDGDCSEIETKKNVNSETK 226
           LN S+ DWI KHV+  PLC LTPIF+DYE YL  I E+ HG  G  SE E+ K V +ET+
Sbjct: 135 LNCSVRDWIVKHVNTNPLCDLTPIFKDYEKYLANI-EQQHGNSGRNSESESNK-VAAETQ 192

Query: 227 NPVEKSKNGIFSESSRDLTVSGSSIFKLDPSKPFSTTPLSSSCNMLGDKPKGFSFGINTA 406
           +P       +  ES+      G+        K    +   +  + LG     F+FG    
Sbjct: 193 SPSLFGSTKLQQEST--FLFHGNKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVD 250

Query: 407 TSTINSIPAI 436
           +S + S+ ++
Sbjct: 251 SSVLGSLSSV 260


>BC016055-1|AAH16055.1|  440|Homo sapiens NUP50 protein protein.
          Length = 440

 Score = 72.5 bits (170), Expect = 1e-12
 Identities = 46/130 (35%), Positives = 66/130 (50%)
 Frame = +2

Query: 47  LNESLSDWIKKHVDETPLCILTPIFRDYEAYLKEIQEEYHGPDGDCSEIETKKNVNSETK 226
           LN S+ DWI KHV+  PLC LTPIF+DYE YL  I E+ HG  G  SE E+ K V +ET+
Sbjct: 135 LNCSVRDWIVKHVNTNPLCDLTPIFKDYEKYLANI-EQQHGNSGRNSESESNK-VAAETQ 192

Query: 227 NPVEKSKNGIFSESSRDLTVSGSSIFKLDPSKPFSTTPLSSSCNMLGDKPKGFSFGINTA 406
           +P       +  ES+      G+        K    +   +  + LG     F+FG    
Sbjct: 193 SPSLFGSTKLQQEST--FLFHGNKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVD 250

Query: 407 TSTINSIPAI 436
           +S + S+ ++
Sbjct: 251 SSVLGSLSSV 260


>AL008718-1|CAI17944.1|  468|Homo sapiens nucleoporin 50kDa protein.
          Length = 468

 Score = 72.5 bits (170), Expect = 1e-12
 Identities = 46/130 (35%), Positives = 66/130 (50%)
 Frame = +2

Query: 47  LNESLSDWIKKHVDETPLCILTPIFRDYEAYLKEIQEEYHGPDGDCSEIETKKNVNSETK 226
           LN S+ DWI KHV+  PLC LTPIF+DYE YL  I E+ HG  G  SE E+ K V +ET+
Sbjct: 163 LNCSVRDWIVKHVNTNPLCDLTPIFKDYEKYLANI-EQQHGNSGRNSESESNK-VAAETQ 220

Query: 227 NPVEKSKNGIFSESSRDLTVSGSSIFKLDPSKPFSTTPLSSSCNMLGDKPKGFSFGINTA 406
           +P       +  ES+      G+        K    +   +  + LG     F+FG    
Sbjct: 221 SPSLFGSTKLQQEST--FLFHGNKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVD 278

Query: 407 TSTINSIPAI 436
           +S + S+ ++
Sbjct: 279 SSVLGSLSSV 288


>BC088365-1|AAH88365.2|  435|Homo sapiens PTD016 protein protein.
          Length = 435

 Score = 30.3 bits (65), Expect = 5.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 392 QKKILLVCLQAYCKNCLMVW 333
           QK ILL+C   +C+ C+ +W
Sbjct: 383 QKPILLICQHIFCEECMTLW 402


>AK098649-1|BAC05364.1|  252|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25783 fis, clone TST06726. ).
          Length = 252

 Score = 30.3 bits (65), Expect = 5.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 392 QKKILLVCLQAYCKNCLMVW 333
           QK ILL+C   +C+ C+ +W
Sbjct: 200 QKPILLICQHIFCEECMTLW 219


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,558,606
Number of Sequences: 237096
Number of extensions: 1604208
Number of successful extensions: 3949
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3949
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6804036910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)