Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30006
(676 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6L4B3 Cluster: Polyprotein, putative; n=6; core eudico... 44 0.003
UniRef50_UPI00006D00DE Cluster: hypothetical protein TTHERM_0082... 40 0.042
UniRef50_UPI0000E48997 Cluster: PREDICTED: similar to reverse tr... 38 0.22
UniRef50_UPI0000E48520 Cluster: PREDICTED: similar to endonuclea... 36 1.2
UniRef50_UPI0000E490F6 Cluster: PREDICTED: similar to endonuclea... 35 1.6
UniRef50_O97916 Cluster: Reverse transcriptase-like; n=70; Bos t... 35 2.1
UniRef50_A7T620 Cluster: Predicted protein; n=1; Nematostella ve... 34 3.6
UniRef50_UPI0000E4958A Cluster: PREDICTED: similar to endonuclea... 33 4.8
UniRef50_Q70ZD5 Cluster: Olfactory receptor; n=9; Laurasiatheria... 33 4.8
UniRef50_Q6MBT4 Cluster: Putative uncharacterized protein; n=1; ... 33 6.3
>UniRef50_Q6L4B3 Cluster: Polyprotein, putative; n=6; core
eudicotyledons|Rep: Polyprotein, putative - Solanum
demissum (Wild potato)
Length = 868
Score = 44.0 bits (99), Expect = 0.003
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Frame = +1
Query: 271 CSHGRH*R*INNIE*EKMEFINLKNCIK---LGWYGNVMKRNDNEICKRVLTMNVEGYTR 441
C H R + N + EK+ ++ + ++ L W+G+V +R+ + +R M VEG TR
Sbjct: 591 CGHTRSDKIRNEVIREKVGVASVVDKLREARLRWFGHVKRRSADAPVRRCEVMVVEG-TR 649
Query: 442 RR*GRPKKKWMDCVEDDM 495
R GRPKK W + + D+
Sbjct: 650 RGRGRPKKYWEEVIRQDL 667
>UniRef50_UPI00006D00DE Cluster: hypothetical protein
TTHERM_00823640; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00823640 - Tetrahymena
thermophila SB210
Length = 1143
Score = 40.3 bits (90), Expect = 0.042
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = -3
Query: 491 SSSTQSIHFFLGLPHLLRV*PSTFIVSTLLQISLSFRFITFPY---HPNFIQFFKFINSI 321
S+ +QS++ F + H R+ P + L+ +S FRF F Y + NF + F INS
Sbjct: 63 SNDSQSVYVFASIAHYFRIYPLIGAIFGLILLSQIFRFFLFKYKLTNNNFAKLFDIINSF 122
Query: 320 FSYSMLFIY 294
+F++
Sbjct: 123 ILKVYVFVF 131
>UniRef50_UPI0000E48997 Cluster: PREDICTED: similar to reverse
transcriptase-like; n=6; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to reverse
transcriptase-like - Strongylocentrotus purpuratus
Length = 415
Score = 37.9 bits (84), Expect = 0.22
Identities = 13/47 (27%), Positives = 33/47 (70%)
Frame = +1
Query: 349 IKLGWYGNVMKRNDNEICKRVLTMNVEGYTRRR*GRPKKKWMDCVED 489
+KLG++G++++ + + + +++ VEG +R+ GR +K+W D +++
Sbjct: 330 LKLGYFGHILRGSGSPLAAQIIESQVEG--KRKRGRQRKQWFDNIKE 374
>UniRef50_UPI0000E48520 Cluster: PREDICTED: similar to
endonuclease-reverse transcriptase; n=2;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
endonuclease-reverse transcriptase - Strongylocentrotus
purpuratus
Length = 958
Score = 35.5 bits (78), Expect = 1.2
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +1
Query: 352 KLGWYGNVMKRNDNEICKRVLTMNVEGYTRRR*GRPKKKWMDCVEDD 492
+L ++G++ + N +L N+ G +R GRP K+W DC++ D
Sbjct: 859 RLRYFGHINRMNSKRYPHILLNGNIHG--KRPRGRPAKRWTDCIKAD 903
>UniRef50_UPI0000E490F6 Cluster: PREDICTED: similar to
endonuclease-reverse transcriptase; n=5;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
endonuclease-reverse transcriptase - Strongylocentrotus
purpuratus
Length = 1030
Score = 35.1 bits (77), Expect = 1.6
Identities = 17/63 (26%), Positives = 35/63 (55%)
Frame = +1
Query: 304 NIE*EKMEFINLKNCIKLGWYGNVMKRNDNEICKRVLTMNVEGYTRRR*GRPKKKWMDCV 483
N++ + M+ ++ K ++ ++G+V++ K + V G R GRP K+W+DC+
Sbjct: 933 NLDQDVMDKVSTK---RIKYFGHVLRMKPTRYPKIAVEGKVTGNRPR--GRPPKRWLDCI 987
Query: 484 EDD 492
+D
Sbjct: 988 SED 990
>UniRef50_O97916 Cluster: Reverse transcriptase-like; n=70; Bos
taurus|Rep: Reverse transcriptase-like - Bos taurus
(Bovine)
Length = 335
Score = 34.7 bits (76), Expect = 2.1
Identities = 17/49 (34%), Positives = 33/49 (67%)
Frame = +1
Query: 349 IKLGWYGNVMKRNDNEICKRVLTMNVEGYTRRR*GRPKKKWMDCVEDDM 495
+KL ++G++M+R D+ + K ++ +EG RRR GR + +W+D + + M
Sbjct: 257 LKLQYFGHLMRRADS-LEKTLMLGKIEG--RRRRGRQRMRWLDGIINSM 302
>UniRef50_A7T620 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 188
Score = 33.9 bits (74), Expect = 3.6
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Frame = -2
Query: 567 PSILLYHIPF--LCSLPRRYVRHT*THIVFHAIHPFLLRSTSSSTSIAFHIH-S*YSLTN 397
P LLY P LC+ P V H THI +A+HP++L T+ + H Y+L
Sbjct: 47 PYTLLYTTPIYLLCTTPIYPVMHY-THIPCYALHPYILLCTTPIYPFMHYTHIPCYALHP 105
Query: 396 LIVISFHHISIPSQFYTIL*IYKFH-FFLLY 307
++ I P YT + Y H + LLY
Sbjct: 106 YTLLCTSPI-YPVIHYTHIPCYALHPYTLLY 135
>UniRef50_UPI0000E4958A Cluster: PREDICTED: similar to
endonuclease-reverse transcriptase, partial; n=7;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
endonuclease-reverse transcriptase, partial -
Strongylocentrotus purpuratus
Length = 787
Score = 33.5 bits (73), Expect = 4.8
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +1
Query: 340 KNCIKLGWYGNVMKRNDNEICKRVLTMNVEGYTRRR*GRPKKKWMDCVEDDM 495
K C+K W+G+V++ + + + + G RR GRP K+W D V+ D+
Sbjct: 444 KRCLK--WFGHVLRMPHHRLPYQAFQNDFNG--RRPRGRPPKRWKDQVQYDV 491
>UniRef50_Q70ZD5 Cluster: Olfactory receptor; n=9;
Laurasiatheria|Rep: Olfactory receptor - Canis
familiaris (Dog)
Length = 216
Score = 33.5 bits (73), Expect = 4.8
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = -3
Query: 470 HFFLGLPHLLRV*PSTFIVSTLLQISLSFRFITFPYHPNFIQFFKFINSIFSYS 309
HFF LP +L++ S +++ ++ S + P+H +++ ++S+ S S
Sbjct: 109 HFFCDLPEVLKLACSDTLINNIVVYSTTGLLAVIPFHGILFSYYQIVSSVLSIS 162
>UniRef50_Q6MBT4 Cluster: Putative uncharacterized protein; n=1;
Candidatus Protochlamydia amoebophila UWE25|Rep:
Putative uncharacterized protein - Protochlamydia
amoebophila (strain UWE25)
Length = 213
Score = 33.1 bits (72), Expect = 6.3
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -3
Query: 410 TLLQISLSFRFITFPYHPNFIQFFKFINSIFSYS 309
TLL ++ S+RF T+ Y FI FF + +F Y+
Sbjct: 11 TLLTVNSSYRFGTYLYQQKFISFFTLSHCLFYYA 44
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 700,432,581
Number of Sequences: 1657284
Number of extensions: 14473406
Number of successful extensions: 30709
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 29746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30696
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52066120554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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