Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30006
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    31   0.20 
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    27   3.3  
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    25   7.6  
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz...    25   10.0 
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual      25   10.0 
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    25   10.0 
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    25   10.0 

>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -3

Query: 422 FIVSTLLQISLS-FRFITFPYHPNFIQFFKFINSI-FSYSMLFIY 294
           F  S +L IS+  F +  +PYHP        I+SI F +S+LF++
Sbjct: 413 FFGSIMLPISMFWFAWTCYPYHPYVHWIVPLISSIFFGWSLLFVF 457


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 192 YLLKYV*LMDKGHLKNDQCSQILTSI-MLTRTSLTINKQHRVGK 320
           +L  ++    K HL  DQC Q+   +   +  + T+ +QHR+ +
Sbjct: 722 FLTDFIIRKQKAHLSADQCKQLANVLTQASPEAKTVLEQHRLSE 765


>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -2

Query: 573 FSPSILLYHIPF-LCSLPRRYVRHT*THIVFHAIHPFLL 460
           ++PSI LYHI F      R +V H     V  A+  FLL
Sbjct: 191 YAPSIPLYHIGFNFAYAERHFVMHPRVKGVSMAVALFLL 229


>SPBC646.14c |orc5||origin recognition complex subunit
           Orc5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 455

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = -2

Query: 483 HAIHPFLLRSTSSSTSIAFHIHS*YSLTNLIVISFHHISIPSQFYT 346
           H I+P  +++   S SI   + S Y L +  + S++   + +QF++
Sbjct: 282 HIINPTEIKNLLDSKSINLSLVSKYLLVSAFLASYNPSRLDAQFFS 327


>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +1

Query: 544 YMIEEYGRRKHVAPTPGDWGEGQENDDERTI*KQKGNGQKMD 669
           Y +   GR++      G +    E D+++ + K+K  GQ  D
Sbjct: 24  YDVSNVGRKRPRTKEEGYYESESEEDEDQILNKEKKEGQSED 65


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 186 KMYLLKYV*LMDKGHLKNDQCSQI 257
           KMY   ++ L  KGH+   QC+++
Sbjct: 496 KMYEANWMDLAQKGHIAKVQCAEV 519


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 362 HPNFIQFFKFINSIFSYSMLFIYR 291
           HP   QF ++   IFS+ ML I R
Sbjct: 350 HPRLHQFHEYEMGIFSFEMLEILR 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,985,268
Number of Sequences: 5004
Number of extensions: 65491
Number of successful extensions: 152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)