Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30006
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0056 + 12955832-12956410,12957398-12957499                       31   0.64 
12_01_0567 + 4641223-4641326,4641700-4642440,4642534-4642735,464...    29   4.5  
01_05_0346 + 21191542-21191783,21191988-21192072,21192159-211924...    28   5.9  

>12_02_0056 + 12955832-12956410,12957398-12957499
          Length = 226

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +1

Query: 541 WYMIEEYGRRKHVAPTPGDWG---EGQENDDE 627
           W ++ + GRR+HV P  G+W      Q+ DDE
Sbjct: 25  WIVVLQKGRRRHVVPAFGEWNYYYHHQQYDDE 56


>12_01_0567 +
           4641223-4641326,4641700-4642440,4642534-4642735,
           4642830-4643285,4643382-4643774,4643868-4643870,
           4645366-4645417,4645929-4646023
          Length = 681

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 346 CIKLGWYGNVMKRNDNEICKRVLTMNVEGY 435
           C   G YGN++   +NE+  R+ +  VEGY
Sbjct: 474 CACAGPYGNILLEINNELSLRIRSALVEGY 503


>01_05_0346 +
           21191542-21191783,21191988-21192072,21192159-21192422,
           21192518-21192820,21193695-21193799,21193916-21194020,
           21194613-21194712,21195614-21195933,21196183-21196359,
           21196432-21196560,21196592-21196636,21196851-21197078
          Length = 700

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
 Frame = +3

Query: 165 VKYF*YAKMYLLKYV*LMD---KGHLKNDQ-CSQILTSI 269
           ++YF  AK+Y L Y  + D   KGH  N++ CS+I+  +
Sbjct: 480 IRYFCMAKVYHLAYKTIQDMHTKGHQLNEELCSEIMMQL 518


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,778,576
Number of Sequences: 37544
Number of extensions: 397934
Number of successful extensions: 802
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)