Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30006
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8130| Best HMM Match : RVT_1 (HMM E-Value=8e-35)                    36   0.040
SB_51102| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.091
SB_7130| Best HMM Match : Toxin_18 (HMM E-Value=5.7)                   33   0.21 
SB_36818| Best HMM Match : RVT_1 (HMM E-Value=8e-35)                   32   0.49 
SB_10620| Best HMM Match : zf-C2H2 (HMM E-Value=0.012)                 32   0.49 
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.49 
SB_31784| Best HMM Match : RVT_1 (HMM E-Value=2e-35)                   30   1.5  
SB_57033| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)            30   1.5  
SB_6541| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.5  
SB_22184| Best HMM Match : PHD (HMM E-Value=0.00011)                   30   2.0  
SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.5  
SB_26867| Best HMM Match : Acyltransferase (HMM E-Value=4.4)           29   4.5  
SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)                    28   7.9  
SB_32573| Best HMM Match : His_leader (HMM E-Value=0.0014)             28   7.9  
SB_6206| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.9  

>SB_8130| Best HMM Match : RVT_1 (HMM E-Value=8e-35)
          Length = 869

 Score = 35.5 bits (78), Expect = 0.040
 Identities = 17/49 (34%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
 Frame = +1

Query: 352 KLGWYGNVMKRNDNEICKRVLTMNV-EGYTRRR*GRPKKKWMDCVEDDM 495
           +L WYG+V++  ++ I ++VL   +  GY  R+ GRPKK++ D ++ ++
Sbjct: 780 QLRWYGHVIRMEESRIPRQVLYSELASGY--RKKGRPKKRYKDNLKSNL 826


>SB_51102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 357

 Score = 34.3 bits (75), Expect = 0.091
 Identities = 14/49 (28%), Positives = 31/49 (63%)
 Frame = -1

Query: 436 YSLPHS*LVLSYKSHCHFVSSHFHTIPILYNSLNL*IPFFPTLCCLFIV 290
           +S+ H+  V+++ SHCH + S  HT+P+ +  +++ + F  +  CL ++
Sbjct: 300 FSVSHTRFVITHSSHCHTLVSVLHTLPLCHTLVSVSL-FSVSHTCLVLL 347


>SB_7130| Best HMM Match : Toxin_18 (HMM E-Value=5.7)
          Length = 441

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -1

Query: 415 LVLSYKSHCHFVSSHFHTIPILYNSLN 335
           LVLS+KS C  +S H+H +  LY  +N
Sbjct: 144 LVLSWKSQCTDLSKHYHNVRYLYPGIN 170


>SB_36818| Best HMM Match : RVT_1 (HMM E-Value=8e-35)
          Length = 629

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 14/48 (29%), Positives = 31/48 (64%)
 Frame = +1

Query: 352 KLGWYGNVMKRNDNEICKRVLTMNVEGYTRRR*GRPKKKWMDCVEDDM 495
           +L W G+V++  ++ I ++VL   +    R++ GRPKK++ D ++ ++
Sbjct: 501 QLRWSGHVIRMEESRIPRQVLYSELASGYRKK-GRPKKRYKDNLKSNL 547


>SB_10620| Best HMM Match : zf-C2H2 (HMM E-Value=0.012)
          Length = 159

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 14/48 (29%), Positives = 31/48 (64%)
 Frame = +1

Query: 352 KLGWYGNVMKRNDNEICKRVLTMNVEGYTRRR*GRPKKKWMDCVEDDM 495
           +L W G+V++  ++ I ++VL   +    R++ GRPKK++ D ++ ++
Sbjct: 31  QLRWSGHVIRMEESRIPRQVLYSELASGYRKK-GRPKKRYKDNLKSNL 77


>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3669

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 14/48 (29%), Positives = 31/48 (64%)
 Frame = +1

Query: 352  KLGWYGNVMKRNDNEICKRVLTMNVEGYTRRR*GRPKKKWMDCVEDDM 495
            +L W G+V++  ++ I ++VL   +    R++ GRPKK++ D ++ ++
Sbjct: 3271 QLRWSGHVIRMEESRIPRQVLYSELASGYRKK-GRPKKRYKDNLKSNL 3317


>SB_31784| Best HMM Match : RVT_1 (HMM E-Value=2e-35)
          Length = 963

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/48 (27%), Positives = 30/48 (62%)
 Frame = +1

Query: 352 KLGWYGNVMKRNDNEICKRVLTMNVEGYTRRR*GRPKKKWMDCVEDDM 495
           +L W G+V++  ++ I ++V    +    R++ GRPKK++ D ++ ++
Sbjct: 835 QLRWSGHVIRMEESRIPRQVFYSELASGYRKK-GRPKKRYKDNLKSNL 881


>SB_57033| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 686

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/48 (27%), Positives = 30/48 (62%)
 Frame = +1

Query: 352 KLGWYGNVMKRNDNEICKRVLTMNVEGYTRRR*GRPKKKWMDCVEDDM 495
           +L W G+V++  ++ I ++V    +    R++ GRPKK++ D ++ ++
Sbjct: 506 QLRWSGHVIRMEESRIPRQVFYSELASGYRKK-GRPKKRYKDNLKSNL 552


>SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)
          Length = 416

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = -2

Query: 492 IVFHAIHPFLLRSTSSSTSIAFHIHS*YSLTNLIVISFHHISIPSQFYTIL*IYKFH 322
           I+ H  HP     +SSS  I  H H   S ++ I+I  HH   PS   +I+ I+  H
Sbjct: 247 IIHHHHHP-----SSSSIIIIIHHHHHPSSSSSIIIIIHHHHHPSSSSSIIIIHHHH 298



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/57 (35%), Positives = 27/57 (47%)
 Frame = -2

Query: 492 IVFHAIHPFLLRSTSSSTSIAFHIHS*YSLTNLIVISFHHISIPSQFYTIL*IYKFH 322
           I+ H  HP    S+SS   I  H H   S + +I+I  HH   PS   +I+ I   H
Sbjct: 278 IIHHHHHP---SSSSSIIIIHHHHHPSSSSSIIIIIIIHHHHHPSSSSSIIIIIHHH 331



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -2

Query: 513 VRHT*THIVFHAIHPFLLRSTSSSTSIAFHIHS*YSLTNLIVISFHH 373
           + H  + I+ H     ++    SS+SI  H H   S + +I+I  HH
Sbjct: 179 IHHHPSSIIIHHPSSSIIHHHPSSSSIIIHHHPSSSSSIIIIIHHHH 225



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = -2

Query: 492 IVFHAIHPFLLRSTSSSTSIAFHIHS*YSLTNLIVISFHHISIPSQFYTIL*IYKFH 322
           I+ H  HP    S+SS   I  H H   S +++I+I  HH    S    I+ I   H
Sbjct: 262 IIHHHHHP---SSSSSIIIIIHHHHHPSSSSSIIIIHHHHHPSSSSSIIIIIIIHHH 315


>SB_6541| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 801

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/48 (27%), Positives = 30/48 (62%)
 Frame = +1

Query: 352 KLGWYGNVMKRNDNEICKRVLTMNVEGYTRRR*GRPKKKWMDCVEDDM 495
           +L W G+V++  ++ I ++V    +    R++ GRPKK++ D ++ ++
Sbjct: 673 QLRWSGHVIRMEESRIPRQVFYRELASGYRKK-GRPKKRYKDNLKSNL 719


>SB_22184| Best HMM Match : PHD (HMM E-Value=0.00011)
          Length = 634

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/48 (33%), Positives = 30/48 (62%)
 Frame = +1

Query: 352 KLGWYGNVMKRNDNEICKRVLTMNVEGYTRRR*GRPKKKWMDCVEDDM 495
           +L WYG+V +R+ + I + +    +EG  +R  GRP+K W + + +D+
Sbjct: 559 RLRWYGHV-QRSTSWI-RWIRDFIIEG--KRTRGRPRKNWHEVLREDL 602


>SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2982

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +2

Query: 512  TYRLGSEQRNGI**RSMEGENMLRRPQVTGEKGRRMMMK--ELYKNKKEMDKK 664
            T+ LGS  +N    R  +G+    +   TG KGR  ++K  + Y N  E D K
Sbjct: 2539 TFTLGSVSKNNESQRDTKGKESDTKGNKTGAKGREAVIKNRDTYINGTETDTK 2591


>SB_26867| Best HMM Match : Acyltransferase (HMM E-Value=4.4)
          Length = 655

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/83 (24%), Positives = 38/83 (45%)
 Frame = -3

Query: 557 SSIIYHFFAHSPDDM*DTHEHISSSTQSIHFFLGLPHLLRV*PSTFIVSTLLQISLSFRF 378
           S I  H ++HS +   D H H+S   +++   +     ++  PS   + T L  S+S R 
Sbjct: 451 SQIHIHTYSHSTETFSDPHPHVSPLNRNLLRSISTRTHIQQEPSQIHIHTNLLRSISTR- 509

Query: 377 ITFPYHPNFIQFFKFINSIFSYS 309
                 P+ I    +++S  ++S
Sbjct: 510 THIQQEPSQIHIHTYLHSTGTFS 532


>SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)
          Length = 1244

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +1

Query: 340 KNCIKLGWYGNVMKRNDNEICKRVLTMNVEGYTRRR*GRPK---KKWMDCVEDDM 495
           +NC+ +   G++   NDN   KR+LT + + Y R R    K   KK +  V+++M
Sbjct: 4   ENCVFIE-NGSLYSENDNVKTKRILTTSEKLYRRLRIASAKESQKKLLQNVQEEM 57


>SB_32573| Best HMM Match : His_leader (HMM E-Value=0.0014)
          Length = 134

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -2

Query: 492 IVFHAIHPFLLRSTSSSTSIAFHIHS*YSLTNLIVISFHH 373
           I+ H  HP    S+SSS+SI    H   S +++I+I  HH
Sbjct: 83  IIIHHHHP---SSSSSSSSIIIIHHHHPSSSSIIIIHHHH 119


>SB_6206| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -3

Query: 464 FLGLPHLLRV*PSTFIVSTLLQISLSF 384
           FLG+  LLR+ PST +   L Q+ LSF
Sbjct: 148 FLGINKLLRMLPSTLLEFCLKQLYLSF 174


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,862,859
Number of Sequences: 59808
Number of extensions: 476555
Number of successful extensions: 1029
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)