Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30006
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   4.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.7  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   4.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.1  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 553 EEYGRRKHVAPTPGDWGEGQENDD 624
           ++Y R   V     +WGEG   DD
Sbjct: 172 QQYLRLLEVPQINLEWGEGSSGDD 195


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 581 ATCFLLPYSSIIYHFFAHSPDDM 513
           ATC+L      +  +F + P DM
Sbjct: 316 ATCYLSHVDPDVVQYFGYLPQDM 338


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 581 ATCFLLPYSSIIYHFFAHSPDDM 513
           ATC+L      +  +F + P DM
Sbjct: 22  ATCYLSHVDPDVVQYFGYLPQDM 44


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 600 PVTWGRRNMFSPSILLYHIPFLCSLPRRYV 511
           PV +GR+   +   +  ++P L + P RY+
Sbjct: 432 PVRFGRKADPNGDYIRRYLPVLKNFPTRYI 461


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,876
Number of Sequences: 438
Number of extensions: 4487
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)