Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30006
         (676 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g66656.1 68416.m00780 MADS-box family protein contains Pfam p...    31   0.70 
At3g27190.1 68416.m03400 uracil phosphoribosyltransferase, putat...    29   2.8  

>At3g66656.1 68416.m00780 MADS-box family protein contains Pfam
           profile: PF00319 SRF-type transcription factor
           (DNA-binding and dimerisation domain)
          Length = 178

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +1

Query: 343 NCIKLGWYGNVMKRNDNEICKRVLTMNVEGYTRRR*GRPKKKWMDCVEDD 492
           +C   G+      R + +ICKR+ ++  E    ++ G    KW++  E D
Sbjct: 81  SCETSGYSRGNRARQEKKICKRLNSITEEAEAEKKHGEDLHKWLESAEQD 130


>At3g27190.1 68416.m03400 uracil phosphoribosyltransferase, putative
           / UMP pyrophosphorylase, putative / UPRTase, putative
           similar to SP|O65583 Uracil phosphoribosyltransferase
           (EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
           {Arabidopsis thaliana}; contains Pfam profile PF00485:
           Phosphoribulokinase / Uridine kinase family
          Length = 483

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 509 DTHEHISSSTQSIHFFLGLPHLLRV*PSTFIVSTLLQI 396
           D H  +    Q IH  LG   L ++ P+ F++ T  QI
Sbjct: 247 DNHVAVDLIVQHIHTKLGQHDLCKIYPNVFVIETTFQI 284


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,351,705
Number of Sequences: 28952
Number of extensions: 331576
Number of successful extensions: 744
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)