Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30005
         (566 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-...    36   0.66 
UniRef50_UPI0000E87AED Cluster: hypothetical protein MB2181_0351...    34   2.7  
UniRef50_Q4W4D1 Cluster: Reverse transcriptase-like; n=1; Anther...    33   3.5  
UniRef50_Q6FNJ1 Cluster: Similar to sp|P53877 Saccharomyces cere...    33   3.5  
UniRef50_Q6CR08 Cluster: Similar to sgd|S0006168 Saccharomyces c...    33   4.7  

>UniRef50_Q9XXW0 Cluster: Endonuclease and reverse
           transcriptase-like protein; n=9; cellular organisms|Rep:
           Endonuclease and reverse transcriptase-like protein -
           Bombyx mori (Silk moth)
          Length = 960

 Score = 35.9 bits (79), Expect = 0.66
 Identities = 17/30 (56%), Positives = 19/30 (63%)
 Frame = -1

Query: 308 FDKAARHQNPLIVAAGNYIPDPTDRMESSR 219
           FDKA RH N LIVAA +Y P+P     S R
Sbjct: 884 FDKAMRHDNRLIVAAADYSPNPDHAGASHR 913


>UniRef50_UPI0000E87AED Cluster: hypothetical protein MB2181_03515;
           n=1; Methylophilales bacterium HTCC2181|Rep:
           hypothetical protein MB2181_03515 - Methylophilales
           bacterium HTCC2181
          Length = 101

 Score = 33.9 bits (74), Expect = 2.7
 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -2

Query: 379 ELSRSGKKLSGDFNL-VIDTTKHPNSIKRRDTRTLSSWP 266
           E  + GKKL+ +FNL ++D T H N IK    RT ++WP
Sbjct: 26  EAVKQGKKLAAEFNLQLLDDTVHCNKIK--IVRTEANWP 62


>UniRef50_Q4W4D1 Cluster: Reverse transcriptase-like; n=1; Antheraea
           mylitta|Rep: Reverse transcriptase-like - Antheraea
           mylitta (Tasar silkworm)
          Length = 186

 Score = 33.5 bits (73), Expect = 3.5
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = -1

Query: 308 FDKAARHQNPLIVAAGNYIPDP 243
           F+KAA H +PL+V+A NY P P
Sbjct: 95  FEKAANHPSPLVVSAANYQPVP 116


>UniRef50_Q6FNJ1 Cluster: Similar to sp|P53877 Saccharomyces
           cerevisiae YNL182c; n=1; Candida glabrata|Rep: Similar
           to sp|P53877 Saccharomyces cerevisiae YNL182c - Candida
           glabrata (Yeast) (Torulopsis glabrata)
          Length = 528

 Score = 33.5 bits (73), Expect = 3.5
 Identities = 22/73 (30%), Positives = 33/73 (45%)
 Frame = +3

Query: 72  NQYCRRSLIGSFVTVHTPPSSVKGVPRFATWDRSSATLSAHIKIAHYR*STAFHSVRRIG 251
           N+Y  +S I  F   H    S  G  +   W+ +S  L +  ++AHY+  T   S     
Sbjct: 87  NRYEEKSAISDFELPHLLLGSTDG-GKIYCWELNSGALLSVKQMAHYQGITKIKSFMDGK 145

Query: 252 NVVTGGHDERVLV 290
             +T G D RV+V
Sbjct: 146 YFITSGKDSRVIV 158


>UniRef50_Q6CR08 Cluster: Similar to sgd|S0006168 Saccharomyces
           cerevisiae YPL247c; n=1; Kluyveromyces lactis|Rep:
           Similar to sgd|S0006168 Saccharomyces cerevisiae YPL247c
           - Kluyveromyces lactis (Yeast) (Candida sphaerica)
          Length = 493

 Score = 33.1 bits (72), Expect = 4.7
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = -2

Query: 319 KHPNSIKRRDTRTLSSWPPVTTF 251
           KHP+S  ++DT TL   PPVT+F
Sbjct: 175 KHPSSASQKDTVTLGQLPPVTSF 197


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 608,922,847
Number of Sequences: 1657284
Number of extensions: 12731199
Number of successful extensions: 28737
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28731
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38321472724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)