Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30005
         (566 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   3.2  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   3.2  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   7.3  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   9.7  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -1

Query: 299 AARHQNPLI---VAAGNYIPDPTDRMESSRLSVMGNFN 195
           +A +  PLI   ++  NY+  P+  ++    S + NFN
Sbjct: 19  SALNSTPLIEFNISTSNYLYTPSSTIDLYNTSSVSNFN 56


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -1

Query: 299 AARHQNPLI---VAAGNYIPDPTDRMESSRLSVMGNFN 195
           +A +  PLI   ++  NY+  P+  ++    S + NFN
Sbjct: 19  SALNSTPLIEFNISTSNYLYTPSSTIDLYNTSSVSNFN 56


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -1

Query: 320 ETPKFDKAARHQNPLIVAAGNYIPDPTD 237
           E+P  D  +   +  +++ GN  P P D
Sbjct: 10  ESPNIDHNSCSSDDTVLSVGNENPPPED 37


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -2

Query: 295 RDTRTLSSWPPVTTFPILRTEWK 227
           RD+R    W P  T     TE+K
Sbjct: 100 RDSRKGLFWSPAATAAATATEYK 122


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,503
Number of Sequences: 336
Number of extensions: 3182
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13995094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)