Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30005
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    29   0.63 
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    28   0.83 
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom...    27   1.9  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   3.4  
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe...    26   4.4  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   4.4  
SPAC13D6.03c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual         25   5.9  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   5.9  
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    25   7.7  
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    25   7.7  
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       25   7.7  
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    25   7.7  

>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 235 EWKAVDYL*WAILMCALSVAEDRSHVANLGTPLTLD 128
           +W A  +L W  L+   +V+E  SH A   + LTL+
Sbjct: 737 QWTAPTFLSWTELLGPTNVSEQSSHTAEQTSNLTLE 772


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 28.3 bits (60), Expect = 0.83
 Identities = 18/38 (47%), Positives = 20/38 (52%)
 Frame = +1

Query: 181 HSAHTLKLPITDSRLLSILSVGSGM*LPAATMRGFWCR 294
           HS H L  P    RLLS+L   S +    A MRGF CR
Sbjct: 810 HSVHELYGPDIAGRLLSVL---SRLFTAYAQMRGFTCR 844


>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 332

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 310 NSIKRRDT-RTLSSWPPVTTFPILRTEWKAVD 218
           N I R DT + + S PPVT    ++  WKA+D
Sbjct: 45  NPIIRSDTIQLVISCPPVTYSDEIQVPWKAID 76


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = +3

Query: 273  DERVLVSRRFIEFGCFVVSITRXXXXXXXXXXXXXXXXXQFIDRATLQPICHYICEVL 446
            DERV + +  IE GC  +S                    Q I++++   IC+Y+ E++
Sbjct: 2161 DERVSILKSMIELGCSYIS------YLGDQRRWFLSALVQIIEKSSSYEICNYLLEIV 2212


>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 415 CNVARSMNCEI*ELSRSGKKLSGDFNLVID 326
           C +A    C++  +SRSG   S D N V+D
Sbjct: 166 CQIAEDWGCKVITVSRSG---STDINTVVD 192


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 102 SFVTVHTPPSSVKGVPRFATWDRSSATLSAHIK 200
           S  T H PPSS++ V      ++S +  S ++K
Sbjct: 36  SKTTYHKPPSSIESVSTLIQPNKSQSVTSPYVK 68


>SPAC13D6.03c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 228

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/40 (25%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = -1

Query: 311 KFDKAARHQNPLIVAAGNYIPDPTDRME-SSRLSVMGNFN 195
           K  K A +  P++++ G ++P P++R + +  ++V+ +F+
Sbjct: 72  KLVKIASNLGPMVISDGLHVPHPSNRFDFALSIAVIHHFS 111


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 148 QGSPHGIDPQPHSAHTLKLPITDSRLLSIL 237
           Q +PH I   PH+ H +   + D+RLL ++
Sbjct: 584 QSTPHSIRTIPHATHAM---VLDNRLLWVV 610


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
 Frame = +2

Query: 308  IWVFRCINHQIKIATE-----FLARSTQFLDLTVH*SCDIAAH 421
            IW+ RC  H  K+A E      L     FL+ T H   D+ AH
Sbjct: 1043 IWLLRCPEHVSKLADEENSESKLIHEKPFLNSTPH-KLDLMAH 1084


>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 169 RSHVANLGTPLTLDGGVWTVTKLPMRDLLQYWFAQAIQT 53
           R ++  L +  T+D  V    KL +++LLQY   Q  QT
Sbjct: 65  RWNIDLLSSTATIDDSVAKRRKLAVQNLLQYDSTQTFQT 103


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 287 QNPLIVAAGNYIPDPTDRMESSRLSVMGNFNVCAECG 177
           Q+P + A+ + +P  +  MES   S++G     AE G
Sbjct: 359 QSPSLPASSSQMPTSSFNMESLSQSLLGTVEAPAEVG 395


>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 564 FT*FLNNNQDPIFQWCIKIELNHSSLGFFFDTKT 463
           F  F+ N +D   QWC K  LN+ +L    D +T
Sbjct: 513 FESFVGNKKD--LQWCRKNYLNYQTLRQALDIRT 544


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,499,468
Number of Sequences: 5004
Number of extensions: 52405
Number of successful extensions: 112
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)