Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30005
         (566 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1139 + 31173271-31173462,31173928-31174087,31174318-311744...    31   0.48 
02_01_0335 + 2386902-2386906,2386976-2387282,2387664-2387777,239...    31   0.64 
01_04_0079 + 15818137-15818244,15818375-15818458,15818492-15818647     30   1.1  
12_01_0905 + 8797369-8797680                                           29   3.4  
07_01_0215 - 1607473-1609494                                           28   6.0  
05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241     28   6.0  
03_05_0514 - 25082662-25082669,25082978-25083043,25083903-250840...    27   7.9  
01_06_0272 - 28065896-28065991,28066069-28066227,28066918-280669...    27   7.9  

>04_04_1139 +
           31173271-31173462,31173928-31174087,31174318-31174487,
           31174566-31174788,31175053-31175207
          Length = 299

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 208 WAILMCALSVAEDRSHVANLGTPLTLDGGVW 116
           W I M AL +A D     N GT + +DGG+W
Sbjct: 235 WDIAMAALYLASDAGKYVN-GTTVVVDGGLW 264


>02_01_0335 +
           2386902-2386906,2386976-2387282,2387664-2387777,
           2390252-2390320,2390416-2390715,2390829-2390930,
           2391085-2391279,2391377-2391664,2391942-2392128,
           2393168-2393272,2393778-2393824,2393982-2394074
          Length = 603

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +2

Query: 101 ELRNCPHTAIQCQRRPKVRHMGSILSHTQRT 193
           E++N  H+  QC R  K+ H GS++SH Q++
Sbjct: 76  EMQNAGHSVDQCDRLKKLLH-GSLMSHLQQS 105


>01_04_0079 + 15818137-15818244,15818375-15818458,15818492-15818647
          Length = 115

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
 Frame = -2

Query: 196 MCALSVAEDRSHVANLGTPLTLD--GGVWTVTKLPMRDLL 83
           +C++++ ED+ +V   GT L +D  GG+ T T +P RDL+
Sbjct: 75  VCSIALDEDQINVYQFGTLLNVDQLGGIVTCTIIP-RDLI 113


>12_01_0905 + 8797369-8797680
          Length = 103

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +2

Query: 221 DCFPFCP*DRECSYRRPR*EGSGVAPLYRIWVFRCINHQIKIATEF 358
           DC      DR   YRRP  +G  +  +Y  + FRC+    K+A+ +
Sbjct: 17  DCETDSEDDRRRGYRRPVPQGGALRVIYNGFYFRCLVCPGKMASRW 62


>07_01_0215 - 1607473-1609494
          Length = 673

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 98  WELR-NCPHTAIQCQRRPKVRHMGSILSHTQR 190
           W  R N P  AI   R PK+ ++GS  SH+ R
Sbjct: 255 WSFRMNGPAQAIDISRLPKLPNLGSKKSHSSR 286


>05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241
          Length = 1445

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -1

Query: 326 YNETPKFDKAARHQNPLIVAAGNYIPDPTDRME 228
           +++ P+ + + +  +PL+ + G+  P PTDR E
Sbjct: 689 FDQKPQIEYSFKDLHPLVFSFGDDDPSPTDRSE 721


>03_05_0514 -
           25082662-25082669,25082978-25083043,25083903-25084017,
           25084769-25084843,25085285-25085338,25085420-25085471,
           25087308-25087447,25087993-25088077,25088358-25088431,
           25088533-25088616,25088617-25088653,25089569-25089872,
           25090371-25090536,25091053-25091076
          Length = 427

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 355 VSCQIYSVLRSHSSLIVRHCSPYAITFAKFYLNLSS 462
           + C     L  H  L++R C  YA+  A F  N+SS
Sbjct: 208 MGCSTTCFLDHHFILLLRACQCYALINANFLRNISS 243


>01_06_0272 -
           28065896-28065991,28066069-28066227,28066918-28066966,
           28067350-28067474,28067834-28068004,28068222-28068571,
           28069322-28069478
          Length = 368

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 67  AQTSIVEDPSLGAS*LSTHRHPVSKASQGSPHGIDPQPHSA 189
           A  S V    +GAS +      +SK ++   HGI P+P SA
Sbjct: 53  AHASSVHGSIMGASRMDNSYVVLSKQNKSHGHGIPPRPPSA 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,526,525
Number of Sequences: 37544
Number of extensions: 362739
Number of successful extensions: 800
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)