Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30005
         (566 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41540-8|AAW30667.1|  571|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U41540-7|AAM54182.1|  930|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U41540-6|AAM54183.1|  934|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z69884-1|CAA93748.1|  313|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z81583-7|CAB04668.1|  268|Caenorhabditis elegans Hypothetical pr...    27   7.1  
Z79757-9|CAB02123.3|  327|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z72514-8|CAA96677.3|  416|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>U41540-8|AAW30667.1|  571|Caenorhabditis elegans Hypothetical
           protein F35H12.2c protein.
          Length = 571

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 90  IFYNTGLRRLFKLGASNAKLPLVFLTSM 7
           I +N GLR LFKLG  N  L    LT++
Sbjct: 171 IMFNYGLRDLFKLGFDNLHLRFFQLTAL 198


>U41540-7|AAM54182.1|  930|Caenorhabditis elegans Hypothetical
           protein F35H12.2a protein.
          Length = 930

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 90  IFYNTGLRRLFKLGASNAKLPLVFLTSM 7
           I +N GLR LFKLG  N  L    LT++
Sbjct: 530 IMFNYGLRDLFKLGFDNLHLRFFQLTAL 557


>U41540-6|AAM54183.1|  934|Caenorhabditis elegans Hypothetical
           protein F35H12.2b protein.
          Length = 934

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 90  IFYNTGLRRLFKLGASNAKLPLVFLTSM 7
           I +N GLR LFKLG  N  L    LT++
Sbjct: 534 IMFNYGLRDLFKLGFDNLHLRFFQLTAL 561


>Z69884-1|CAA93748.1|  313|Caenorhabditis elegans Hypothetical
           protein F31F6.1 protein.
          Length = 313

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -2

Query: 193 CALSVAEDRSHVANLGTPLTLDGGVWTVTKLPMRDLLQ 80
           C+        +V +LGTP+ L GG  +VT LP R +L+
Sbjct: 170 CSFEELMPAENVRSLGTPVELSGG--SVTVLPHRRVLE 205


>Z81583-7|CAB04668.1|  268|Caenorhabditis elegans Hypothetical
           protein T02G6.7 protein.
          Length = 268

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/44 (22%), Positives = 20/44 (45%)
 Frame = -3

Query: 531 IFQWCIKIELNHSSLGFFFDTKTTGQIQIKLRKCNGIWAAMSHD 400
           I QW + +   +  L F F+ +   +  ++    +G+W A   D
Sbjct: 162 ISQWSLNLVAPNGDLLFHFNPRPNAKFVVRATLLDGVWGASEED 205


>Z79757-9|CAB02123.3|  327|Caenorhabditis elegans Hypothetical
           protein F55B12.2 protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 257 YIPDPTDRMESSRLSVMGNFNVCAECG 177
           +I DP DR  S  L V  N N C +CG
Sbjct: 147 FIRDPFDRFISFYLHVCKNDNGCWDCG 173


>Z72514-8|CAA96677.3|  416|Caenorhabditis elegans Hypothetical
           protein T10B10.5 protein.
          Length = 416

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -3

Query: 516 IKIELNHSSLGFFFDTKTTGQIQIKLRKCNGIWAAMSHDQ 397
           I +EL   +  F   ++T  ++Q+ L KC  +W A+  ++
Sbjct: 365 ITVELITETGTFGIASRTLSRMQLPLHKCKDLWRAIIREE 404


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,952,158
Number of Sequences: 27780
Number of extensions: 302732
Number of successful extensions: 623
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)