Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30005
         (566 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   3.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.9  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   8.6  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   8.6  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   8.6  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 11/54 (20%), Positives = 24/54 (44%)
 Frame = -2

Query: 208 WAILMCALSVAEDRSHVANLGTPLTLDGGVWTVTKLPMRDLLQYWFAQAIQTRG 47
           W  +M     +E+ + ++ +GT     GG+  V + P +    +   +A +  G
Sbjct: 182 WDEVMPYYLKSENNTELSRVGTKYHRSGGLMNVERFPYQPPFAWKILKAAEEAG 235


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 270 HDERVLVSRRFIEFGCFVV 326
           +D+RV + ++F EFG   V
Sbjct: 545 YDDRVPIDKKFNEFGTTAV 563


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 270 HDERVLVSRRFIEFGCFVV 326
           +D+RV + ++F EFG   V
Sbjct: 545 YDDRVPIDKKFNEFGTTAV 563


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 246 IGNVVTGGHDERVLVSR 296
           I N V G HD+  LVSR
Sbjct: 339 IPNWVPGNHDQLRLVSR 355


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 326 YNETPKFDKAARHQNPLIVAAGN 258
           YN   K D+A+R   PL   A N
Sbjct: 417 YNSVSKIDRASRIVFPLFFLAIN 439


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 246 IGNVVTGGHDERVLVSR 296
           I N V G HD+  LVSR
Sbjct: 339 IPNWVPGNHDQLRLVSR 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,895
Number of Sequences: 438
Number of extensions: 3691
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)