Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30001
         (340 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       22   1.5  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   1.5  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    21   3.4  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    20   6.0  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    20   8.0  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    20   8.0  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
 Frame = -3

Query: 251 RVYGKDRNVSTCRRSDNISTCPKYMRSTFATPSPFRTQF--TNQLPLATLTDVIFP 90
           R Y ++ + S      NI  C  Y+       SP+   +  T   PL  +T  + P
Sbjct: 309 RAYCRENHASWVNHLSNIEDCLNYVPHISTGFSPYEILYGRTPPNPLDAVTSGLLP 364


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 117 GNTNRCHFSRRKNGRY 70
           GN++RCH S   +G Y
Sbjct: 165 GNSHRCHCSDGYSGSY 180


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -1

Query: 310 GCRSFFGFFSLPQLFLVFTFESTAKTEMFQPVDGQTTF 197
           G R ++   + P LF      S  K  +FQ  + QTTF
Sbjct: 496 GIRHYYVNVTFPHLFNGLVDYSLWKALIFQISNLQTTF 533


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 52  KKITSFISPVFSPGKM 99
           + + + +SPVF+ GKM
Sbjct: 124 RNLRTKLSPVFTSGKM 139


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 279 SEKKPKKERQPKMSY*ETPY 338
           S+  P+KE + K S  + PY
Sbjct: 67  SKNSPEKESEEKKSKEKPPY 86


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -1

Query: 310 GCRSFFG 290
           GC+SFFG
Sbjct: 24  GCKSFFG 30


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,250
Number of Sequences: 336
Number of extensions: 1418
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6558670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)