Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30001
         (340 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    30   0.11 
SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ...    29   0.26 
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    29   0.26 
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    28   0.45 
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    25   4.2  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    25   4.2  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    24   7.3  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    23   9.6  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    23   9.6  

>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 29.9 bits (64), Expect = 0.11
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 231 KCFNLSTVRQHFDVSKIYAFNVCNTFAISYAIH 133
           K FNL  VR    + +I  FN+  TF ++Y +H
Sbjct: 466 KLFNLYGVRTIGQLQRIEKFNLQETFGVNYGLH 498


>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 28.7 bits (61), Expect = 0.26
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = -1

Query: 277 PQLFLVFTFESTAKTEMFQPVDGQTTFRRVQNI 179
           P++FL  + +S +K E+F+P+DG+ +     NI
Sbjct: 227 PRVFLNASVDSFSKQEVFEPLDGKNSNFEPDNI 259


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 28.7 bits (61), Expect = 0.26
 Identities = 21/76 (27%), Positives = 39/76 (51%)
 Frame = +1

Query: 16  PLHGQKEKSLRKKKITSFISPVFSPGKMTSVSVARGS*LVNCVRNGEGVANVERIYFGHV 195
           PL  +KE SLRK  ++ F + +F+ G++  + V     + N + N +   N +  +    
Sbjct: 388 PLDQEKELSLRKSWLSHFSNLLFNHGQLKYLPVLTRDEISNYLLNIQAHPNYQTFH---- 443

Query: 196 EMLSDRRQVETFLSLP 243
           +MLS+R  +  +L  P
Sbjct: 444 QMLSNR--LSEYLGFP 457


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 27.9 bits (59), Expect = 0.45
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -3

Query: 167  FATPSPFRTQFTNQLPLATLTDVIFPGEKTGDINDVIFFFRRDFSF 30
            ++ P P    F + +P   LT+++  G+    +NDV ++    F F
Sbjct: 1033 WSIPFPTHHNFFSIIPFILLTEILRTGKMLPRLNDVEYYINNVFLF 1078


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 17/67 (25%), Positives = 25/67 (37%)
 Frame = -3

Query: 230 NVSTCRRSDNISTCPKYMRSTFATPSPFRTQFTNQLPLATLTDVIFPGEKTGDINDVIFF 51
           NVS     +  +  P Y      T  P +T +   LP  T  D I    +TG I      
Sbjct: 87  NVSRVTSPNVANFAPGYFPLPNNTTQPVKTVYVGNLPPNTPIDEILSCVRTGPIESAWIL 146

Query: 50  FRRDFSF 30
             ++ +F
Sbjct: 147 PEKNCAF 153


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 37  KSLRKKKITSFISPVFSPGKMTSVSV 114
           KSL  +K+T  +S + +PG MT V V
Sbjct: 229 KSLVVEKLTKKLSRIKTPGIMTDVKV 254


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
            Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -3

Query: 110  LTDVIFPGEKTGDINDVIFFF 48
            LT+++FPG +  + N+V+ +F
Sbjct: 1296 LTNLLFPGLEPREFNEVLDYF 1316


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 268 FLVFTFESTAKTEMFQPVDGQTTFRRVQNICVQRLQH 158
           F V T +STAK +  +  DGQ   R +QN  V    H
Sbjct: 501 FSVSTLKSTAKKDTGKAGDGQN--REIQNEPVSLESH 535


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 181 ICVQRLQHLRHFVRNSLINFPW 116
           +CVQ L HL   ++ +L  + W
Sbjct: 540 VCVQNLSHLSKGLKRTLDRYYW 561


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,239,489
Number of Sequences: 5004
Number of extensions: 22257
Number of successful extensions: 69
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)