Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30001
(340 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0664 + 18501248-18502802,18503370-18505054 28 2.1
02_05_0311 + 27782110-27782326,27784121-27784268,27784394-277844... 28 2.1
07_03_0632 - 20112297-20116562 27 3.8
02_04_0056 + 19313422-19313967,19314035-19314168,19314263-193143... 27 3.8
05_04_0256 - 19465636-19466709,19467649-19467765,19468168-194682... 27 5.0
03_05_1122 + 30546314-30549277,30549615-30549693,30549857-305499... 27 5.0
11_06_0153 - 20693663-20693689,20693808-20694096,20694493-206948... 26 8.7
10_01_0168 - 1883380-1883594,1884572-1888325 26 8.7
08_01_0009 + 68825-68950,72571-72669,72841-72929,74971-75087,757... 26 8.7
06_01_0020 + 212055-213440 26 8.7
>04_03_0664 + 18501248-18502802,18503370-18505054
Length = 1079
Score = 27.9 bits (59), Expect = 2.1
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = -1
Query: 310 GCRSFFGFFSLPQLFLVFTFESTAKTEMFQPVDGQTTFRRVQNICVQRLQHLRH 149
GC FGF SL LF+ E E + ++G+ F R++ + V+ + LR+
Sbjct: 667 GCERPFGFPSLEYLFI----EHLPALEEWVEMEGEHLFPRLKALVVRHCKELRN 716
>02_05_0311 +
27782110-27782326,27784121-27784268,27784394-27784478,
27784555-27784650,27785666-27785731,27785900-27785998,
27786145-27786258,27786468-27786578,27786672-27786734,
27786816-27786908,27787960-27788073,27788440-27788505,
27788782-27788994,27789086-27789116,27789459-27791587
Length = 1214
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -3
Query: 185 KYMRSTFATPSPFRTQFTNQLPLATLT 105
+YMRST T +P +QF+ Q P+ +L+
Sbjct: 490 EYMRSTILTYTPSISQFSLQAPMLSLS 516
>07_03_0632 - 20112297-20116562
Length = 1421
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -1
Query: 262 VFTFESTAKTEMFQPVDGQTTFRRVQNICVQRLQHLRHFVRNSL 131
+ FES K E + + +F +QN+ + R +LR SL
Sbjct: 1009 ILCFESMGKLENWADSQNEESFSNLQNLQINRCDNLRELPLMSL 1052
>02_04_0056 +
19313422-19313967,19314035-19314168,19314263-19314398,
19314870-19314923,19314995-19315135,19315220-19315546,
19315647-19315916,19316080-19316226,19316890-19317045,
19317223-19317290,19318210-19318309,19318696-19318985,
19319074-19319274,19319840-19319902,19320263-19320356,
19320964-19321035,19321979-19322077,19322254-19322376
Length = 1006
Score = 27.1 bits (57), Expect = 3.8
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +2
Query: 140 AYEMAKVLQTLNAYILDTSKCCLTVDRLKHFC 235
A + K + T+ + D+SK C+T H C
Sbjct: 451 AMGLGKTIMTIALLLADSSKGCITTQHSTHIC 482
>05_04_0256 -
19465636-19466709,19467649-19467765,19468168-19468279,
19469019-19469167,19469378-19469449,19469544-19469609,
19471945-19472073,19474539-19474647,19475225-19475304,
19475408-19475533,19475607-19475657,19475738-19475920,
19476019-19476105,19476184-19476294,19476692-19476796,
19477513-19477678,19477769-19477941,19478022-19478094,
19479472-19479655,19479759-19480203
Length = 1203
Score = 26.6 bits (56), Expect = 5.0
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -1
Query: 340 PYGVSQ*LILG--CRSFFGFFSLPQLFLVFTFESTAKTEMFQPVDGQTTFRRVQ 185
P+ V Q +G C + ++SL LF++F FEST + + T RRV+
Sbjct: 229 PFFVFQVFCVGLWCLDEYWYYSLFTLFMLFLFESTMAKNRLKTL---TELRRVK 279
>03_05_1122 +
30546314-30549277,30549615-30549693,30549857-30549945,
30550422-30550538,30550873-30551111,30552279-30552365,
30552732-30552831,30553319-30553532,30553617-30553777
Length = 1349
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 252 KVKTRNNCGSEKKPKKERQPKMS 320
K TRNNCGS KK R+ S
Sbjct: 534 KKLTRNNCGSSKKGMSTRRQHQS 556
>11_06_0153 -
20693663-20693689,20693808-20694096,20694493-20694829,
20695304-20696516,20700247-20700744
Length = 787
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 230 NVSTCRRSDNISTCPKYMRSTFATPSP 150
N TC+++ N + KY+ S A P P
Sbjct: 374 NQQTCQKNVNDTAAQKYLNSVIAYPYP 400
>10_01_0168 - 1883380-1883594,1884572-1888325
Length = 1322
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 161 LQTLNAYILDTSKCCLTVDRLKHFCLCRRLE 253
LQTL +++ C TV L++ LC LE
Sbjct: 674 LQTLTYFVVGAISGCSTVRELQNLNLCGELE 704
>08_01_0009 +
68825-68950,72571-72669,72841-72929,74971-75087,
75747-75906,76419-76549,76810-76906,77584-77877
Length = 370
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -2
Query: 138 IH*STSPGNTNRCHFSRRKNGRYK*CDFFFSQRFFLLSVQRC 13
IH S SP C +GR + CDF +S+ L RC
Sbjct: 97 IHISYSPRRW-ACRICDMSSGRLRPCDFKYSKLLASLQTFRC 137
>06_01_0020 + 212055-213440
Length = 461
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 9 AHTAARTKGKISAKKKNHIIYIARFF 86
AHT A + +++A + IIY AR+F
Sbjct: 350 AHTDADIRARVAAWEVKPIIYTARYF 375
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,662,242
Number of Sequences: 37544
Number of extensions: 130396
Number of successful extensions: 363
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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