Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30001
         (340 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.3  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   4.1  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   4.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    20   7.1  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    20   7.1  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    20   7.1  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
 Frame = -3

Query: 203 NISTCPKYMRSTFATPSPFRTQFTNQLPLATLTDVIFPGEKTGD-INDV 60
           N  T P+ +    A P+    +    +    L D   PGE  GD + DV
Sbjct: 94  NAGTPPEAVSYNVAVPTKSILEKKPDVTTVELVDATDPGEHNGDTVTDV 142


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 47  EKKKSHHLYRPFFRRE 94
           EK+K HHL  P +  +
Sbjct: 195 EKRKEHHLEGPSYNSD 210



 Score = 20.2 bits (40), Expect = 7.1
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 249 SKVKTRNNCGSEKKP 293
           SK+K  N+C +++ P
Sbjct: 453 SKIKESNSCSNDQLP 467


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 202 TFRRVQNICVQRLQHLRHFVRNSLIN 125
           +F+R  + C  R + LRH  RNS  N
Sbjct: 223 SFQRTSS-CHSRYEDLRHEDRNSYRN 247


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = -3

Query: 140 QFTNQLPLATLTDVIFPGE--KTGDINDVIFFF 48
           Q+   LP+    D+I PG   +  D++ ++  F
Sbjct: 447 QYQQSLPVYQYNDLILPGVTIQNVDVSQLVTLF 479


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 46  RKKKITSFISPVFSPGKM 99
           R + + S +SP+F+ GK+
Sbjct: 127 RWRPLRSRLSPIFTSGKL 144


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 43  LRKKKITSFISPV-FSPGKMTSVSVARGS*LVNCVRN 150
           L K ++ + + PV  +PGKM   ++ +    +NC R+
Sbjct: 449 LEKHELAN-VHPVGINPGKMQLKNIIKKLLQINCYRS 484


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,670
Number of Sequences: 438
Number of extensions: 1696
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)